Analysis of interatomic Contacts of Structural Units in PDB entry:
3TUV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TUV entry

There are 2 chains in PDB entry 3TUV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 42HIS 1011
B
 UNK 1UNK 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 3TUV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
95 99Right-handed 310
Helix 2
2
A
105 115Right-handed alpha
Helix 3
3
A
125 133Right-handed alpha
Helix 4
4
A
157 167Right-handed alpha
Helix 5
5
A
168 170Right-handed 310
Helix 6
6
A
175 194Right-handed alpha
Helix 7
7
A
196 208Right-handed alpha
Helix 8
8
A
213 217Right-handed 310
Helix 9
9
A
222 227Right-handed alpha
Helix 10
10
A
229 234Right-handed alpha
Helix 11
11
A
236 249Right-handed alpha
Helix 12
12
A
250 252Right-handed 310
Helix 13
13
A
263 276Right-handed alpha
Helix 14
14
A
294 298Right-handed 310
Helix 15
15
A
322 326Right-handed 310
Helix 16
16
A
329 339Right-handed alpha
Helix 17
17
A
345 353Right-handed alpha
Helix 18
18
A
380 386Right-handed alpha
Helix 19
19
A
386 405Right-handed alpha
Helix 20
20
A
407 424Right-handed alpha
Helix 21
21
A
429 441Right-handed alpha
Helix 22
22
A
445 449Right-handed 310
Helix 23
23
A
460 469Right-handed alpha
Helix 24
24
A
470 471Right-handed 310
Helix 25
25
A
472 475Right-handed 310
Helix 26
26
A
483 486Right-handed 310
Helix 27
27
A
506 515Right-handed alpha
Helix 28
28
A
581 584Right-handed 310
Helix 29
29
A
586 614Right-handed alpha
Helix 30
30
A
637 651Right-handed alpha
Helix 31
31
A
655 672Right-handed alpha
Helix 32
32
A
673 676Right-handed 310
Helix 33
33
A
677 690Right-handed alpha
Helix 34
34
A
696 705Right-handed alpha
Helix 35
35
A
708 721Right-handed alpha
Helix 36
36
A
734 753Right-handed alpha
Helix 37
37
A
759 763Right-handed 310
Helix 38
38
A
801 824Right-handed alpha
Helix 39
39
A
855 877Right-handed alpha
Helix 40
40
A
878 895Right-handed alpha
Helix 41
41
A
899 913Right-handed alpha
Helix 42
42
A
919 929Right-handed alpha
Helix 43
43
A
932 944Right-handed alpha
Helix 44
44
A
994 1001Right-handed alpha
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There are 5 sheets in PDB entry 3TUV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 51first strand
Strand 2
A
63 69anti-parallel
Strand 3
A
74 79anti-parallel
Strand 4
A
254 260parallel
Strand 5
A
85 92anti-parallel
Strand 6
A
147 154anti-parallel
Strand 7
A
137 142anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 367first strand
Strand 2
A
370 379anti-parallel
Strand 3
A
312 320anti-parallel
Strand 4
A
477 481anti-parallel
Strand 5
A
300 304parallel
Strand 6
A
499 504anti-parallel
Strand 7
A
491 492anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
549 553first strand
Strand 2
A
557 563anti-parallel
Strand 3
A
722 731parallel
Strand 4
A
571 579anti-parallel
Strand 5
A
626 634anti-parallel
Strand 6
A
616 622anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
549 553first strand
Strand 2
A
557 563anti-parallel
Strand 3
A
722 731parallel
Strand 4
A
756 757parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
833 840first strand
Strand 2
A
843 852anti-parallel
Strand 3
A
789 799anti-parallel
Strand 4
A
952 959anti-parallel
Strand 5
A
776 782parallel
Strand 6
A
990 992parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il