Analysis of interatomic Contacts of Structural Units in PDB entry:
3TVA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TVA entry

There are 2 chains in PDB entry 3TVA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 6CYS 287
B
 HIS 4CYS 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3TVA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 30Right-handed alpha
Helix 2
2
A
41 45Right-handed 310
Helix 3
3
A
46 60Right-handed alpha
Helix 4
4
A
78 86Right-handed alpha
Helix 5
5
A
93 112Right-handed alpha
Helix 6
6
A
128 147Right-handed alpha
Helix 7
7
A
160 172Right-handed alpha
Helix 8
8
A
181 188Right-handed alpha
Helix 9
9
A
192 201Right-handed alpha
Helix 10
10
A
216 220Right-handed 310
Helix 11
11
A
236 247Right-handed alpha
Helix 12
12
A
262 285Right-handed alpha
Helix 13
13
B
23 30Right-handed alpha
Helix 14
14
B
41 45Right-handed 310
Helix 15
15
B
46 60Right-handed alpha
Helix 16
16
B
78 86Right-handed alpha
Helix 17
17
B
93 112Right-handed alpha
Helix 18
18
B
128 148Right-handed alpha
Helix 19
19
B
160 172Right-handed alpha
Helix 20
20
B
181 188Right-handed alpha
Helix 21
21
B
192 201Right-handed alpha
Helix 22
22
B
216 220Right-handed 310
Helix 23
23
B
236 248Right-handed alpha
Helix 24
24
B
268 286Right-handed alpha
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There are 4 sheets in PDB entry 3TVA. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 15first strand
Strand 2
A
34 38parallel
Strand 3
A
63 68parallel
Strand 4
A
115 118parallel
Strand 5
A
151 155parallel
Strand 6
A
176 180parallel
Strand 7
A
204 209parallel
Strand 8
A
253 255parallel
Strand 9
A
10 15parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 213first strand
Strand 2
A
226 228anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
34 37parallel
Strand 3
B
63 68parallel
Strand 4
B
115 118parallel
Strand 5
B
151 155parallel
Strand 6
B
176 180parallel
Strand 7
B
204 209parallel
Strand 8
B
253 255parallel
Strand 9
B
10 14parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 213first strand
Strand 2
B
226 228anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il