Analysis of interatomic Contacts of Structural Units in PDB entry:
3UAJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UAJ entry

There are 6 chains in PDB entry 3UAJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1GLY 395
H
 GLU 1PRO 223
L
 GLU 2GLU 214
A
 MET 1GLY 395
C
 GLU 1LYS 224
D
 GLU 2CYS 215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3UAJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
82 86Right-handed 310
Helix 2
2
B
192 194Right-handed 310
Helix 3
3
B
210 215Right-handed alpha
Helix 4
4
B
233 236Right-handed 310
Helix 5
5
B
256 264Right-handed alpha
Helix 6
6
H
86 90Right-handed 310
Helix 7
7
H
166 168Right-handed 310
Helix 8
8
H
197 199Right-handed 310
Helix 9
9
L
80 84Right-handed 310
Helix 10
10
L
122 129Right-handed alpha
Helix 11
11
L
184 189Right-handed alpha
Helix 12
12
A
82 86Right-handed 310
Helix 13
13
A
192 194Right-handed 310
Helix 14
14
A
210 215Right-handed alpha
Helix 15
15
A
233 236Right-handed 310
Helix 16
16
A
256 264Right-handed alpha
Helix 17
17
C
86 90Right-handed 310
Helix 18
18
C
166 168Right-handed 310
Helix 19
19
C
197 199Right-handed 310
Helix 20
20
D
80 84Right-handed 310
Helix 21
21
D
122 129Right-handed alpha
Helix 22
22
D
184 189Right-handed alpha
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There are 36 sheets in PDB entry 3UAJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 13first strand
Strand 2
B
30 35parallel
Strand 3
B
38 49anti-parallel
Strand 4
B
136 143anti-parallel
Strand 5
B
160 164anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 25first strand
Strand 2
B
282 288anti-parallel
Strand 3
B
179 188anti-parallel
Strand 4
B
170 175anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 99first strand
Strand 2
B
109 129anti-parallel
Strand 3
B
196 201anti-parallel
Strand 4
B
204 209anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 99first strand
Strand 2
B
109 129anti-parallel
Strand 3
B
54 72anti-parallel
Strand 4
B
220 221anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 240first strand
Strand 2
B
250 252anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
306 314first strand
Strand 2
B
320 326anti-parallel
Strand 3
B
364 370anti-parallel
Strand 4
B
350 351anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 334first strand
Strand 2
B
357 358anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
337 340first strand
Strand 2
B
374 380anti-parallel
Strand 3
B
387 393anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
117 121parallel
Strand 3
H
91 98anti-parallel
Strand 4
H
33 40anti-parallel
Strand 5
H
44 51anti-parallel
Strand 6
H
58 59anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
117 121parallel
Strand 3
H
91 98anti-parallel
Strand 4
H
110 113anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
130 134first strand
Strand 2
H
145 155anti-parallel
Strand 3
H
186 195anti-parallel
Strand 4
H
174 175anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
130 134first strand
Strand 2
H
145 155anti-parallel
Strand 3
H
186 195anti-parallel
Strand 4
H
179 180anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
161 164first strand
Strand 2
H
204 210anti-parallel
Strand 3
H
215 221anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
5 8first strand
Strand 2
L
20 26anti-parallel
Strand 3
L
71 76anti-parallel
Strand 4
L
63 67anti-parallel
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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 14first strand
Strand 2
L
103 107parallel
Strand 3
L
86 91anti-parallel
Strand 4
L
34 39anti-parallel
Strand 5
L
46 50anti-parallel
Strand 6
L
54 55anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
115 119first strand
Strand 2
L
130 140anti-parallel
Strand 3
L
174 183anti-parallel
Strand 4
L
160 164anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
155 156first strand
Strand 2
L
145 150anti-parallel
Strand 3
L
192 199anti-parallel
Strand 4
L
206 211anti-parallel
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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
30 35parallel
Strand 3
A
38 49anti-parallel
Strand 4
A
136 143anti-parallel
Strand 5
A
160 164anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 25first strand
Strand 2
A
282 288anti-parallel
Strand 3
A
179 188anti-parallel
Strand 4
A
170 175anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 99first strand
Strand 2
A
109 129anti-parallel
Strand 3
A
54 72anti-parallel
Strand 4
A
220 221anti-parallel
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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 99first strand
Strand 2
A
109 129anti-parallel
Strand 3
A
196 201anti-parallel
Strand 4
A
204 209anti-parallel
Strand 5
A
269 271anti-parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
249 252anti-parallel
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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 314first strand
Strand 2
A
320 326anti-parallel
Strand 3
A
364 370anti-parallel
Strand 4
A
350 351anti-parallel
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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 334first strand
Strand 2
A
357 358anti-parallel
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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 340first strand
Strand 2
A
374 380anti-parallel
Strand 3
A
387 393anti-parallel
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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
77 82anti-parallel
Strand 4
C
67 72anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
117 121parallel
Strand 3
C
91 98anti-parallel
Strand 4
C
33 40anti-parallel
Strand 5
C
44 51anti-parallel
Strand 6
C
58 59anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
117 121parallel
Strand 3
C
91 98anti-parallel
Strand 4
C
110 113anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 134first strand
Strand 2
C
145 155anti-parallel
Strand 3
C
186 195anti-parallel
Strand 4
C
174 175anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 134first strand
Strand 2
C
145 155anti-parallel
Strand 3
C
186 195anti-parallel
Strand 4
C
179 180anti-parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
161 164first strand
Strand 2
C
204 210anti-parallel
Strand 3
C
215 221anti-parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 8first strand
Strand 2
D
20 26anti-parallel
Strand 3
D
71 76anti-parallel
Strand 4
D
63 67anti-parallel
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There are 6 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 14first strand
Strand 2
D
103 107parallel
Strand 3
D
86 91anti-parallel
Strand 4
D
34 39anti-parallel
Strand 5
D
46 50anti-parallel
Strand 6
D
54 55anti-parallel
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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
115 119first strand
Strand 2
D
130 140anti-parallel
Strand 3
D
174 183anti-parallel
Strand 4
D
160 161anti-parallel
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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
155 156first strand
Strand 2
D
145 150anti-parallel
Strand 3
D
192 199anti-parallel
Strand 4
D
206 211anti-parallel
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