Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 3UAL entry
Note, this PDB entry contains
modified residue(s) PHOSPHOSERINE (SEP) . This residue is
treated as heterogroup (ligand) both in the
PDB entry and in LPC/CSU analysis.
There are 3 chains in PDB entry 3UAL
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
ASP 3 | THR 232 |
P
|
ARG 35 | PHE 37 |
P
|
GLU 39 | GLY 42 |
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There are 11
helices in PDB entry 3UAL. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
1 | A
| 3 |
18 | Right-handed alpha |
Helix 2 |
2 | A
| 19 |
32 | Right-handed alpha |
Helix 3 |
3 | A
| 38 |
72 | Right-handed alpha |
Helix 4 |
4 | A
| 75 |
107 | Right-handed alpha |
Helix 5 |
5 | A
| 107 |
112 | Right-handed alpha |
Helix 6 |
6 | A
| 114 |
136 | Right-handed alpha |
Helix 7 |
7 | A
| 137 |
163 | Right-handed alpha |
Helix 8 |
8 | A
| 167 |
184 | Right-handed alpha |
Helix 9 |
9 | A
| 187 |
205 | Right-handed alpha |
Helix 10 |
10 | A
| 206 |
209 | Right-handed 310 |
Helix 11 |
11 | A
| 213 |
232 | Right-handed alpha |
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There are no sheets in PDB entry
3UAL
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il