Analysis of interatomic Contacts of Structural Units in PDB entry:
3UED


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UED entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 3UED (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 5MET 141
B
ALA 1ARG 2
B
LYS 4THR 6
C
PRO 4ASP 142
D
ALA 1ARG 2
D
LYS 4THR 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3UED. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
8 13Right-handed 310
Helix 2
2
A
15 21Right-handed alpha
Helix 3
3
A
35 41Right-handed alpha
Helix 4
4
A
73 80Right-handed alpha
Helix 5
5
A
85 88Right-handed 310
Helix 6
6
A
93 95Right-handed 310
Helix 7
7
A
98 141Right-handed alpha
Helix 8
8
C
8 13Right-handed 310
Helix 9
9
C
15 21Right-handed alpha
Helix 10
10
C
35 41Right-handed alpha
Helix 11
11
C
73 80Right-handed alpha
Helix 12
12
C
85 88Right-handed 310
Helix 13
13
C
93 95Right-handed 310
Helix 14
14
C
98 141Right-handed alpha
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There are 2 sheets in PDB entry 3UED. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
43 45first strand
Strand 2
A
55 57anti-parallel
Strand 3
A
61 64anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
43 45first strand
Strand 2
C
55 57anti-parallel
Strand 3
C
61 64anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il