Analysis of interatomic Contacts of Structural Units in PDB entry:
3UZP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3UZP entry

There are 2 chains in PDB entry 3UZP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3LYS 294
B
 LEU 3LYS 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3UZP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 60Right-handed alpha
Helix 2
2
A
88 96Right-handed alpha
Helix 3
3
A
101 122Right-handed alpha
Helix 4
4
A
130 132Right-handed 310
Helix 5
5
A
138 142Right-handed 310
Helix 6
6
A
181 186Right-handed alpha
Helix 7
7
A
191 209Right-handed alpha
Helix 8
8
A
223 235Right-handed alpha
Helix 9
9
A
236 241Right-handed alpha
Helix 10
10
A
246 257Right-handed alpha
Helix 11
11
A
265 280Right-handed alpha
Helix 12
12
A
288 293Right-handed 310
Helix 13
13
B
51 60Right-handed alpha
Helix 14
14
B
88 96Right-handed alpha
Helix 15
15
B
101 122Right-handed alpha
Helix 16
16
B
130 132Right-handed 310
Helix 17
17
B
138 142Right-handed 310
Helix 18
18
B
183 187Right-handed 310
Helix 19
19
B
191 209Right-handed alpha
Helix 20
20
B
220 235Right-handed alpha
Helix 21
21
B
236 241Right-handed alpha
Helix 22
22
B
245 258Right-handed alpha
Helix 23
23
B
265 280Right-handed alpha
Helix 24
24
B
288 293Right-handed 310
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There are 7 sheets in PDB entry 3UZP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
9 18anti-parallel
Strand 3
A
21 28anti-parallel
Strand 4
A
33 41anti-parallel
Strand 5
A
77 83anti-parallel
Strand 6
A
68 74anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
154 155anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
145 147anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
9 10anti-parallel
Strand 3
B
22 28anti-parallel
Strand 4
B
14 16anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
9 10anti-parallel
Strand 3
B
22 28anti-parallel
Strand 4
B
33 41anti-parallel
Strand 5
B
77 83anti-parallel
Strand 6
B
68 74anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 125first strand
Strand 2
B
154 155anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 136first strand
Strand 2
B
145 147anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il