Analysis of interatomic Contacts of Structural Units in PDB entry:
3V0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V0D entry

There are 2 chains in PDB entry 3V0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 251ASP 575
B
 ARG 246ASP 575
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3V0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
289 300Right-handed alpha
Helix 2
2
A
316 321Right-handed 310
Helix 3
3
A
336 353Right-handed alpha
Helix 4
4
A
367 381Right-handed alpha
Helix 5
5
A
386 399Right-handed alpha
Helix 6
6
A
412 429Right-handed alpha
Helix 7
7
A
521 525Right-handed 310
Helix 8
8
A
534 536Right-handed 310
Helix 9
9
A
546 548Right-handed 310
Helix 10
10
A
553 557Right-handed 310
Helix 11
11
B
247 252Right-handed alpha
Helix 12
12
B
288 300Right-handed alpha
Helix 13
13
B
316 321Right-handed 310
Helix 14
14
B
336 353Right-handed alpha
Helix 15
15
B
367 381Right-handed alpha
Helix 16
16
B
386 399Right-handed alpha
Helix 17
17
B
412 429Right-handed alpha
Helix 18
18
B
521 525Right-handed 310
Helix 19
19
B
534 536Right-handed 310
Helix 20
20
B
546 548Right-handed 310
Helix 21
21
B
553 557Right-handed 310
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There are 8 sheets in PDB entry 3V0D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 257first strand
Strand 2
A
260 268anti-parallel
Strand 3
A
271 274anti-parallel
Strand 4
A
358 362parallel
Strand 5
A
304 310parallel
Strand 6
A
324 329parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 278first strand
Strand 2
A
287 288parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 487first strand
Strand 2
A
492 497anti-parallel
Strand 3
A
439 447anti-parallel
Strand 4
A
565 572anti-parallel
Strand 5
A
540 544anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 475first strand
Strand 2
A
460 466anti-parallel
Strand 3
A
506 513anti-parallel
Strand 4
A
527 532anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 257first strand
Strand 2
B
260 262anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 268first strand
Strand 2
B
271 274anti-parallel
Strand 3
B
358 362parallel
Strand 4
B
304 310parallel
Strand 5
B
324 329parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
482 487first strand
Strand 2
B
492 497anti-parallel
Strand 3
B
439 447anti-parallel
Strand 4
B
565 572anti-parallel
Strand 5
B
540 544anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
469 475first strand
Strand 2
B
460 466anti-parallel
Strand 3
B
506 513anti-parallel
Strand 4
B
527 532anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il