Analysis of interatomic Contacts of Structural Units in PDB entry:
3V5L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V5L entry

There are 4 chains in PDB entry 3V5L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 355ALA 616
B
 GLY 355GLY 619
C
 GLY 355ALA 616
D
 GLY 355GLY 619
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 3V5L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
359 361Right-handed 310
Helix 2
2
A
399 411Right-handed alpha
Helix 3
3
A
442 450Right-handed alpha
Helix 4
4
A
455 476Right-handed alpha
Helix 5
5
A
484 486Right-handed 310
Helix 6
6
A
492 494Right-handed 310
Helix 7
7
A
521 525Right-handed 310
Helix 8
8
A
526 533Right-handed alpha
Helix 9
9
A
536 553Right-handed alpha
Helix 10
10
A
563 574Right-handed alpha
Helix 11
11
A
584 595Right-handed alpha
Helix 12
12
A
598 602Right-handed 310
Helix 13
13
A
604 616Right-handed alpha
Helix 14
14
B
359 361Right-handed 310
Helix 15
15
B
400 411Right-handed alpha
Helix 16
16
B
442 450Right-handed alpha
Helix 17
17
B
455 476Right-handed alpha
Helix 18
18
B
484 486Right-handed 310
Helix 19
19
B
492 494Right-handed 310
Helix 20
20
B
521 525Right-handed 310
Helix 21
21
B
526 533Right-handed alpha
Helix 22
22
B
536 553Right-handed alpha
Helix 23
23
B
563 574Right-handed alpha
Helix 24
24
B
584 595Right-handed alpha
Helix 25
25
B
598 602Right-handed 310
Helix 26
26
B
604 619Right-handed alpha
Helix 27
27
C
359 361Right-handed 310
Helix 28
28
C
399 411Right-handed alpha
Helix 29
29
C
442 450Right-handed alpha
Helix 30
30
C
455 476Right-handed alpha
Helix 31
31
C
484 486Right-handed 310
Helix 32
32
C
492 494Right-handed 310
Helix 33
33
C
520 525Right-handed 310
Helix 34
34
C
526 533Right-handed alpha
Helix 35
35
C
536 553Right-handed alpha
Helix 36
36
C
563 574Right-handed alpha
Helix 37
37
C
584 595Right-handed alpha
Helix 38
38
C
598 602Right-handed 310
Helix 39
39
C
604 616Right-handed alpha
Helix 40
40
D
359 361Right-handed 310
Helix 41
41
D
399 411Right-handed alpha
Helix 42
42
D
442 450Right-handed alpha
Helix 43
43
D
455 476Right-handed alpha
Helix 44
44
D
484 486Right-handed 310
Helix 45
45
D
492 494Right-handed 310
Helix 46
46
D
521 525Right-handed 310
Helix 47
47
D
526 533Right-handed alpha
Helix 48
48
D
536 553Right-handed alpha
Helix 49
49
D
563 573Right-handed alpha
Helix 50
50
D
584 595Right-handed alpha
Helix 51
51
D
598 602Right-handed 310
Helix 52
52
D
604 619Right-handed alpha
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There are 8 sheets in PDB entry 3V5L. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 370first strand
Strand 2
A
376 382anti-parallel
Strand 3
A
386 392anti-parallel
Strand 4
A
432 436anti-parallel
Strand 5
A
421 425anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 490first strand
Strand 2
A
496 498anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
363 370first strand
Strand 2
B
377 382anti-parallel
Strand 3
B
386 392anti-parallel
Strand 4
B
432 436anti-parallel
Strand 5
B
421 425anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
488 490first strand
Strand 2
B
496 498anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
363 370first strand
Strand 2
C
376 382anti-parallel
Strand 3
C
386 392anti-parallel
Strand 4
C
432 436anti-parallel
Strand 5
C
421 425anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
488 490first strand
Strand 2
C
496 498anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
363 371first strand
Strand 2
D
376 382anti-parallel
Strand 3
D
386 392anti-parallel
Strand 4
D
432 436anti-parallel
Strand 5
D
421 425anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
488 490first strand
Strand 2
D
496 498anti-parallel
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