Analysis of interatomic Contacts of Structural Units in PDB entry:
3V6R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V6R entry

There are 2 chains in PDB entry 3V6R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 45SER 401
B
ASP 45SER 401
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 3V6R. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
101 118Right-handed alpha
Helix 2
2
A
153 157Right-handed alpha
Helix 3
3
A
162 183Right-handed alpha
Helix 4
4
A
191 193Right-handed 310
Helix 5
5
A
231 236Right-handed alpha
Helix 6
6
A
243 259Right-handed alpha
Helix 7
7
A
267 280Right-handed alpha
Helix 8
8
A
283 289Right-handed alpha
Helix 9
9
A
291 301Right-handed alpha
Helix 10
10
A
308 313Right-handed alpha
Helix 11
11
A
314 318Right-handed 310
Helix 12
12
A
322 340Right-handed alpha
Helix 13
13
A
349 355Right-handed alpha
Helix 14
14
A
359 363Right-handed 310
Helix 15
15
A
364 369Right-handed alpha
Helix 16
16
A
386 400Right-handed alpha
Helix 17
17
B
101 118Right-handed alpha
Helix 18
19
B
162 183Right-handed alpha
Helix 19
20
B
191 193Right-handed 310
Helix 20
21
B
231 236Right-handed alpha
Helix 21
22
B
243 259Right-handed alpha
Helix 22
23
B
267 280Right-handed alpha
Helix 23
24
B
283 289Right-handed alpha
Helix 24
25
B
291 301Right-handed alpha
Helix 25
26
B
308 313Right-handed alpha
Helix 26
27
B
314 318Right-handed 310
Helix 27
28
B
322 340Right-handed alpha
Helix 28
29
B
349 355Right-handed alpha
Helix 29
30
B
359 363Right-handed 310
Helix 30
31
B
364 369Right-handed alpha
Helix 31
32
B
386 400Right-handed alpha
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There are 6 sheets in PDB entry 3V6R. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
48 53first strand
Strand 2
A
56 61anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
64 72first strand
Strand 2
A
77 83anti-parallel
Strand 3
A
88 94anti-parallel
Strand 4
A
143 147anti-parallel
Strand 5
A
126 130anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
151 152first strand
Strand 2
A
195 197anti-parallel
Strand 3
A
203 205anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
48 53first strand
Strand 2
B
56 61anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
64 72first strand
Strand 2
B
77 83anti-parallel
Strand 3
B
88 96anti-parallel
Strand 4
B
141 147anti-parallel
Strand 5
B
126 130anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
151 152first strand
Strand 2
B
195 197anti-parallel
Strand 3
B
203 205anti-parallel
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