Analysis of interatomic Contacts of Structural Units in PDB entry:
3V89


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V89 entry

There are 2 chains in PDB entry 3V89 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 51PHE 915
B
 ASP 337THR 675
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3V89. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
13
A
856 860Right-handed 310
Helix 2
14
A
897 901Right-handed 310
Helix 3
15
B
348 362Right-handed alpha
Helix 4
16
B
373 383Right-handed alpha
Helix 5
17
B
392 402Right-handed alpha
Helix 6
18
B
441 445Right-handed 310
Helix 7
19
B
460 472Right-handed alpha
Helix 8
20
B
492 496Right-handed 310
Helix 9
21
B
501 505Right-handed 310
Helix 10
22
B
515 527Right-handed alpha
Helix 11
23
B
536 542Right-handed alpha
Helix 12
24
B
555 557Right-handed 310
Helix 13
25
B
572 574Right-handed 310
Helix 14
26
B
592 609Right-handed alpha
Helix 15
27
B
646 656Right-handed alpha
Helix 16
28
B
668 675Right-handed alpha
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There are 13 sheets in PDB entry 3V89. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 64first strand
Strand 2
A
150 155anti-parallel
Strand 3
A
169 173anti-parallel
Strand 4
A
109 113parallel
Strand 5
A
116 117anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
100 101anti-parallel
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There are 11 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 278first strand
Strand 2
A
257 260anti-parallel
Strand 3
A
547 557parallel
Strand 4
A
495 527anti-parallel
Strand 5
A
575 592anti-parallel
Strand 6
A
596 610anti-parallel
Strand 7
A
624 632anti-parallel
Strand 8
A
638 649anti-parallel
Strand 9
A
673 684anti-parallel
Strand 10
A
691 712anti-parallel
Strand 11
A
775 776anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
775 776first strand
Strand 2
A
691 712anti-parallel
Strand 3
A
717 742anti-parallel
Strand 4
A
757 771anti-parallel
Strand 5
A
790 797anti-parallel
Strand 6
A
805 813anti-parallel
Strand 7
A
845 854anti-parallel
Strand 8
A
861 867anti-parallel
Strand 9
A
906 915anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 227first strand
Strand 2
A
317 319anti-parallel
Strand 3
A
326 342anti-parallel
Strand 4
A
394 415anti-parallel
Strand 5
A
425 438anti-parallel
Strand 6
A
465 485anti-parallel
Strand 7
A
495 527anti-parallel
Strand 8
A
487 488anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
465 485first strand
Strand 2
A
441 447anti-parallel
Strand 3
A
394 415anti-parallel
Strand 4
A
326 342anti-parallel
Strand 5
A
305 314anti-parallel
Strand 6
A
216 227anti-parallel
Strand 7
A
202 213anti-parallel
Strand 8
A
188 197anti-parallel
Strand 9
A
906 915anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 250first strand
Strand 2
A
280 286anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 382first strand
Strand 2
A
388 390anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
822 824first strand
Strand 2
A
834 836anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
342 346first strand
Strand 2
B
366 370parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
389 391first strand
Strand 2
B
586 589anti-parallel
Strand 3
B
405 411anti-parallel
Strand 4
B
637 639anti-parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
482 484first strand
Strand 2
B
448 451parallel
Strand 3
B
530 534parallel
Strand 4
B
426 433anti-parallel
Strand 5
B
559 562anti-parallel
Strand 6
B
568 570anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
482 484first strand
Strand 2
B
448 451parallel
Strand 3
B
530 534parallel
Strand 4
B
426 433anti-parallel
Strand 5
B
580 582anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il