Analysis of interatomic Contacts of Structural Units in PDB entry:
3V8V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V8V entry

There are 2 chains in PDB entry 3V8V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 702
B
 MET 1ALA 702
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 48 helices in PDB entry 3V8V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 23Right-handed alpha
Helix 2
2
A
40 51Right-handed alpha
Helix 3
3
A
68 78Right-handed alpha
Helix 4
4
A
79 84Right-handed 310
Helix 5
5
A
104 122Right-handed alpha
Helix 6
6
A
174 185Right-handed alpha
Helix 7
7
A
201 212Right-handed alpha
Helix 8
8
A
224 228Right-handed 310
Helix 9
9
A
232 254Right-handed alpha
Helix 10
10
A
264 278Right-handed alpha
Helix 11
11
A
280 282Right-handed 310
Helix 12
12
A
290 294Right-handed 310
Helix 13
13
A
318 337Right-handed alpha
Helix 14
14
A
348 354Right-handed alpha
Helix 15
15
A
392 413Right-handed alpha
Helix 16
16
A
454 471Right-handed alpha
Helix 17
17
A
473 475Right-handed 310
Helix 18
18
A
523 525Right-handed 310
Helix 19
19
A
526 536Right-handed alpha
Helix 20
20
A
550 559Right-handed alpha
Helix 21
21
A
570 584Right-handed alpha
Helix 22
22
A
597 605Right-handed alpha
Helix 23
23
A
630 644Right-handed alpha
Helix 24
24
A
664 671Right-handed alpha
Helix 25
25
A
684 691Right-handed 310
Helix 26
26
B
12 23Right-handed alpha
Helix 27
27
B
40 51Right-handed alpha
Helix 28
28
B
68 78Right-handed alpha
Helix 29
29
B
80 85Right-handed alpha
Helix 30
30
B
105 120Right-handed alpha
Helix 31
31
B
174 185Right-handed alpha
Helix 32
32
B
201 212Right-handed alpha
Helix 33
33
B
232 254Right-handed alpha
Helix 34
34
B
264 278Right-handed alpha
Helix 35
35
B
280 282Right-handed 310
Helix 36
36
B
290 294Right-handed 310
Helix 37
37
B
319 337Right-handed alpha
Helix 38
38
B
351 356Right-handed 310
Helix 39
39
B
394 413Right-handed alpha
Helix 40
40
B
454 471Right-handed alpha
Helix 41
41
B
473 475Right-handed 310
Helix 42
42
B
523 525Right-handed 310
Helix 43
43
B
526 537Right-handed alpha
Helix 44
44
B
550 559Right-handed alpha
Helix 45
45
B
570 583Right-handed alpha
Helix 46
46
B
597 605Right-handed alpha
Helix 47
47
B
631 645Right-handed alpha
Helix 48
48
B
664 669Right-handed alpha
Back to top of page

There are 11 sheets in PDB entry 3V8V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 31first strand
Strand 2
A
34 39anti-parallel
Strand 3
A
2 7anti-parallel
Strand 4
A
57 65anti-parallel
Strand 5
A
147 153anti-parallel
Strand 6
A
137 144anti-parallel
Strand 7
A
91 96parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 288first strand
Strand 2
A
258 262parallel
Strand 3
A
193 195parallel
Strand 4
A
305 308parallel
Strand 5
A
341 346parallel
Strand 6
A
371 378anti-parallel
Strand 7
A
361 366anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 422first strand
Strand 2
A
430 435anti-parallel
Strand 3
A
438 443anti-parallel
Strand 4
A
477 480parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
500 505first strand
Strand 2
A
508 513anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
591 595first strand
Strand 2
A
563 568parallel
Strand 3
A
541 545parallel
Strand 4
A
609 614parallel
Strand 5
A
646 656parallel
Strand 6
A
695 701anti-parallel
Strand 7
A
673 677anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 30first strand
Strand 2
B
35 39anti-parallel
Strand 3
B
2 7anti-parallel
Strand 4
B
56 60anti-parallel
Strand 5
B
151 153anti-parallel
Strand 6
B
137 140anti-parallel
Strand 7
B
91 94parallel
Back to list of sheets
Back to top of page

There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
284 288first strand
Strand 2
B
258 262parallel
Strand 3
B
193 195parallel
Strand 4
B
305 308parallel
Strand 5
B
341 346parallel
Strand 6
B
370 378anti-parallel
Strand 7
B
361 367anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
417 422first strand
Strand 2
B
430 435anti-parallel
Strand 3
B
438 443anti-parallel
Strand 4
B
477 478parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
501 505first strand
Strand 2
B
508 512anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
591 595first strand
Strand 2
B
563 568parallel
Strand 3
B
541 545parallel
Strand 4
B
609 614parallel
Strand 5
B
646 656parallel
Strand 6
B
695 701anti-parallel
Strand 7
B
673 677anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
619 620first strand
Strand 2
B
629 630anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il