Analysis of interatomic Contacts of Structural Units in PDB entry:
3VBB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VBB entry

There are 6 chains in PDB entry 3VBB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2ILE 476
B
 VAL 2PRO 475
C
 VAL 2PRO 475
D
 VAL 2ILE 476
E
 VAL 2ILE 476
F
 VAL 2ILE 476
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are105 helices in PDB entry 3VBB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 8Right-handed 310
Helix 2
2
A
9 13Right-handed 310
Helix 3
3
A
15 26Right-handed alpha
Helix 4
4
A
30 71Right-handed alpha
Helix 5
5
A
81 85Right-handed 310
Helix 6
6
A
91 97Right-handed alpha
Helix 7
7
A
102 113Right-handed alpha
Helix 8
8
A
117 132Right-handed alpha
Helix 9
9
A
133 135Right-handed 310
Helix 10
10
A
148 153Right-handed alpha
Helix 11
11
A
169 177Right-handed alpha
Helix 12
12
A
182 190Right-handed alpha
Helix 13
13
A
198 218Right-handed alpha
Helix 14
14
A
231 238Right-handed alpha
Helix 15
15
A
272 278Right-handed alpha
Helix 16
16
A
335 355Right-handed alpha
Helix 17
17
A
365 369Right-handed 310
Helix 18
18
A
400 407Right-handed alpha
Helix 19
19
A
433 445Right-handed alpha
Helix 20
20
A
453 458Right-handed alpha
Helix 21
21
B
4 13Right-handed 310
Helix 22
22
B
15 26Right-handed alpha
Helix 23
23
B
30 68Right-handed alpha
Helix 24
24
B
91 97Right-handed alpha
Helix 25
25
B
99 133Right-handed alpha
Helix 26
26
B
148 153Right-handed alpha
Helix 27
27
B
169 177Right-handed alpha
Helix 28
28
B
182 190Right-handed alpha
Helix 29
29
B
198 218Right-handed alpha
Helix 30
30
B
231 238Right-handed alpha
Helix 31
31
B
241 246Right-handed alpha
Helix 32
32
B
272 278Right-handed alpha
Helix 33
33
B
286 290Right-handed 310
Helix 34
34
B
335 355Right-handed alpha
Helix 35
35
B
365 369Right-handed 310
Helix 36
36
B
400 406Right-handed alpha
Helix 37
37
B
433 445Right-handed alpha
Helix 38
38
B
453 460Right-handed 310
Helix 39
39
C
4 13Right-handed 310
Helix 40
40
C
15 26Right-handed alpha
Helix 41
41
C
30 70Right-handed alpha
Helix 42
42
C
81 85Right-handed 310
Helix 43
43
C
92 96Right-handed 310
Helix 44
44
C
102 114Right-handed alpha
Helix 45
45
C
117 132Right-handed alpha
Helix 46
46
C
133 135Right-handed 310
Helix 47
47
C
169 177Right-handed alpha
Helix 48
48
C
182 190Right-handed alpha
Helix 49
49
C
198 217Right-handed alpha
Helix 50
50
C
231 238Right-handed alpha
Helix 51
51
C
272 281Right-handed alpha
Helix 52
52
C
335 355Right-handed alpha
Helix 53
53
C
365 369Right-handed 310
Helix 54
54
C
399 406Right-handed alpha
Helix 55
55
C
433 445Right-handed alpha
Helix 56
56
C
453 458Right-handed alpha
Helix 57
57
D
9 13Right-handed 310
Helix 58
58
D
15 26Right-handed alpha
Helix 59
59
D
30 68Right-handed alpha
Helix 60
60
D
91 96Right-handed alpha
Helix 61
61
D
99 133Right-handed alpha
Helix 62
62
D
148 153Right-handed alpha
Helix 63
63
D
169 177Right-handed alpha
Helix 64
64
D
182 190Right-handed alpha
Helix 65
65
D
198 218Right-handed alpha
Helix 66
66
D
231 235Right-handed alpha
Helix 67
67
D
272 281Right-handed alpha
Helix 68
68
D
286 290Right-handed 310
Helix 69
69
D
335 355Right-handed alpha
Helix 70
70
D
365 369Right-handed 310
Helix 71
71
D
399 407Right-handed alpha
Helix 72
72
D
433 445Right-handed alpha
Helix 73
73
D
453 458Right-handed alpha
Helix 74
74
E
4 13Right-handed 310
Helix 75
75
E
15 26Right-handed alpha
Helix 76
76
E
30 63Right-handed alpha
Helix 77
77
E
91 97Right-handed alpha
Helix 78
78
E
99 134Right-handed alpha
Helix 79
79
E
148 153Right-handed alpha
Helix 80
80
E
169 177Right-handed alpha
Helix 81
81
E
182 190Right-handed alpha
Helix 82
82
E
198 217Right-handed alpha
Helix 83
83
E
231 238Right-handed alpha
Helix 84
84
E
272 281Right-handed alpha
Helix 85
85
E
335 355Right-handed alpha
Helix 86
86
E
365 369Right-handed 310
Helix 87
87
E
400 406Right-handed alpha
Helix 88
88
E
433 444Right-handed alpha
Helix 89
89
E
453 458Right-handed alpha
Helix 90
90
E
461 465Right-handed 310
Helix 91
91
F
4 13Right-handed 310
Helix 92
92
F
15 26Right-handed alpha
Helix 93
93
F
30 68Right-handed alpha
Helix 94
94
F
101 133Right-handed alpha
Helix 95
95
F
149 153Right-handed 310
Helix 96
96
F
169 177Right-handed alpha
Helix 97
97
F
184 190Right-handed alpha
Helix 98
98
F
198 218Right-handed alpha
Helix 99
99
F
231 237Right-handed alpha
Helix 100
100
F
272 281Right-handed alpha
Helix 101
101
F
335 355Right-handed alpha
Helix 102
102
F
365 369Right-handed 310
Helix 103
103
F
400 406Right-handed alpha
Helix 104
104
F
433 445Right-handed alpha
Helix 105
105
F
453 458Right-handed alpha
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There are 20 sheets in PDB entry 3VBB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 159first strand
Strand 2
A
359 363anti-parallel
Strand 3
A
375 383anti-parallel
Strand 4
A
388 397anti-parallel
Strand 5
A
424 432anti-parallel
Strand 6
A
320 330anti-parallel
Strand 7
A
292 301anti-parallel
Strand 8
A
221 224parallel
Strand 9
B
195 197anti-parallel
Strand 10
B
180 181anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 181first strand
Strand 2
A
195 197anti-parallel
Strand 3
B
221 224anti-parallel
Strand 4
B
292 301parallel
Strand 5
B
320 330anti-parallel
Strand 6
B
424 432anti-parallel
Strand 7
B
388 397anti-parallel
Strand 8
B
375 383anti-parallel
Strand 9
B
359 363anti-parallel
Strand 10
B
154 159anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 230first strand
Strand 2
A
266 268anti-parallel
Strand 3
A
249 251anti-parallel
Strand 4
B
248 250anti-parallel
Strand 5
B
266 268anti-parallel
Strand 6
B
228 230anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 285first strand
Strand 2
A
409 410parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
449 451first strand
Strand 2
A
467 469anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 285first strand
Strand 2
B
408 410parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
449 451first strand
Strand 2
B
467 469anti-parallel
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There are 10 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
154 159first strand
Strand 2
C
359 363anti-parallel
Strand 3
C
375 383anti-parallel
Strand 4
C
388 397anti-parallel
Strand 5
C
424 432anti-parallel
Strand 6
C
320 330anti-parallel
Strand 7
C
292 301anti-parallel
Strand 8
C
221 224parallel
Strand 9
D
195 197anti-parallel
Strand 10
D
180 181anti-parallel
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There are 10 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
180 181first strand
Strand 2
C
195 197anti-parallel
Strand 3
D
221 224anti-parallel
Strand 4
D
292 301parallel
Strand 5
D
320 330anti-parallel
Strand 6
D
424 432anti-parallel
Strand 7
D
388 397anti-parallel
Strand 8
D
375 383anti-parallel
Strand 9
D
359 363anti-parallel
Strand 10
D
154 159anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
228 230first strand
Strand 2
C
266 268anti-parallel
Strand 3
C
249 250anti-parallel
Strand 4
D
249 251anti-parallel
Strand 5
D
266 268anti-parallel
Strand 6
D
228 230anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
284 285first strand
Strand 2
C
409 410parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
449 450first strand
Strand 2
C
468 469anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
284 285first strand
Strand 2
D
409 410parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
449 451first strand
Strand 2
D
467 469anti-parallel
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There are 10 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
154 159first strand
Strand 2
E
359 363anti-parallel
Strand 3
E
375 383anti-parallel
Strand 4
E
388 397anti-parallel
Strand 5
E
424 432anti-parallel
Strand 6
E
320 330anti-parallel
Strand 7
E
292 301anti-parallel
Strand 8
E
221 224parallel
Strand 9
F
195 197anti-parallel
Strand 10
F
180 181anti-parallel
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There are 10 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
180 181first strand
Strand 2
E
195 197anti-parallel
Strand 3
F
221 224anti-parallel
Strand 4
F
292 301parallel
Strand 5
F
320 330anti-parallel
Strand 6
F
424 432anti-parallel
Strand 7
F
388 397anti-parallel
Strand 8
F
375 383anti-parallel
Strand 9
F
359 363anti-parallel
Strand 10
F
154 159anti-parallel
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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
265 267first strand
Strand 2
E
249 251anti-parallel
Strand 3
F
248 250anti-parallel
Strand 4
F
266 268anti-parallel
Strand 5
F
228 230anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
284 285first strand
Strand 2
E
409 410parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
449 451first strand
Strand 2
E
467 469anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
449 451first strand
Strand 2
F
467 469anti-parallel
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