Analysis of interatomic Contacts of Structural Units in PDB entry:
3VG9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VG9 entry

There are 3 chains in PDB entry 3VG9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 6ARG 309
B
ASP 1ASN 212
C
GLU 1PRO 226
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 3VG9. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
6 34Right-handed alpha
Helix 2
2
A
35 38Right-handed 310
Helix 3
3
A
39 58Right-handed alpha
Helix 4
4
A
58 66Right-handed alpha
Helix 5
5
A
67 69Right-handed 310
Helix 6
6
A
73 82Right-handed alpha
Helix 7
7
A
83 108Right-handed alpha
Helix 8
8
A
108 116Right-handed alpha
Helix 9
9
A
117 137Right-handed alpha
Helix 10
10
A
138 142Right-handed 310
Helix 11
11
A
167 172Right-handed alpha
Helix 12
12
A
173 178Right-handed alpha
Helix 13
13
A
186 214Right-handed alpha
Helix 14
14
A
221 259Right-handed alpha
Helix 15
15
A
269 280Right-handed alpha
Helix 16
16
A
283 292Right-handed alpha
Helix 17
17
A
292 307Right-handed alpha
Helix 18
18
B
79 83Right-handed 310
Helix 19
19
B
121 128Right-handed alpha
Helix 20
20
B
183 188Right-handed alpha
Helix 21
21
C
28 32Right-handed 310
Helix 22
22
C
62 65Right-handed 310
Helix 23
23
C
87 91Right-handed 310
Helix 24
24
C
167 169Right-handed 310
Helix 25
25
C
211 214Right-handed 310
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There are 11 sheets in PDB entry 3VG9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
4 7first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
70 75anti-parallel
Strand 4
B
62 67anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
10 13first strand
Strand 2
B
102 106parallel
Strand 3
B
84 90anti-parallel
Strand 4
B
33 38anti-parallel
Strand 5
B
45 49anti-parallel
Strand 6
B
53 54anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
10 13first strand
Strand 2
B
102 106parallel
Strand 3
B
84 90anti-parallel
Strand 4
B
97 98anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
114 118first strand
Strand 2
B
129 139anti-parallel
Strand 3
B
173 182anti-parallel
Strand 4
B
159 163anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
153 154first strand
Strand 2
B
145 150anti-parallel
Strand 3
B
191 197anti-parallel
Strand 4
B
205 210anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
3 6first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
10 12first strand
Strand 2
C
118 122parallel
Strand 3
C
92 103anti-parallel
Strand 4
C
34 40anti-parallel
Strand 5
C
44 52anti-parallel
Strand 6
C
57 60anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
10 12first strand
Strand 2
C
118 122parallel
Strand 3
C
92 103anti-parallel
Strand 4
C
107 114anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
131 135first strand
Strand 2
C
146 156anti-parallel
Strand 3
C
185 195anti-parallel
Strand 4
C
174 176anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
131 135first strand
Strand 2
C
146 156anti-parallel
Strand 3
C
185 195anti-parallel
Strand 4
C
180 182anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
162 165first strand
Strand 2
C
205 210anti-parallel
Strand 3
C
215 220anti-parallel
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