Analysis of interatomic Contacts of Structural Units in PDB entry:
3VGA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VGA entry

There are 3 chains in PDB entry 3VGA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6LEU 308
B
 ASP 1ASN 212
C
 GLU 1GLY 225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 3VGA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 34Right-handed alpha
Helix 2
2
A
35 38Right-handed 310
Helix 3
3
A
39 58Right-handed alpha
Helix 4
4
A
58 66Right-handed alpha
Helix 5
5
A
73 82Right-handed alpha
Helix 6
6
A
82 108Right-handed alpha
Helix 7
7
A
108 116Right-handed alpha
Helix 8
8
A
117 137Right-handed alpha
Helix 9
9
A
138 141Right-handed 310
Helix 10
10
A
167 172Right-handed alpha
Helix 11
11
A
173 179Right-handed alpha
Helix 12
12
A
186 213Right-handed alpha
Helix 13
13
A
221 258Right-handed alpha
Helix 14
14
A
266 279Right-handed alpha
Helix 15
15
A
282 292Right-handed alpha
Helix 16
16
A
292 307Right-handed alpha
Helix 17
17
B
79 83Right-handed 310
Helix 18
18
B
121 126Right-handed alpha
Helix 19
19
B
183 187Right-handed alpha
Helix 20
20
C
28 32Right-handed 310
Helix 21
21
C
62 65Right-handed 310
Helix 22
22
C
87 91Right-handed 310
Helix 23
23
C
167 169Right-handed 310
Helix 24
24
C
211 214Right-handed 310
Back to top of page

There are 12 sheets in PDB entry 3VGA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
164 165anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
70 75anti-parallel
Strand 4
B
62 67anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
102 106parallel
Strand 3
B
84 90anti-parallel
Strand 4
B
33 38anti-parallel
Strand 5
B
45 49anti-parallel
Strand 6
B
53 54anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
102 106parallel
Strand 3
B
84 90anti-parallel
Strand 4
B
97 98anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 118first strand
Strand 2
B
129 139anti-parallel
Strand 3
B
173 182anti-parallel
Strand 4
B
159 163anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 155first strand
Strand 2
B
145 150anti-parallel
Strand 3
B
191 198anti-parallel
Strand 4
B
201 210anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 6first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 12first strand
Strand 2
C
118 122parallel
Strand 3
C
92 103anti-parallel
Strand 4
C
34 40anti-parallel
Strand 5
C
44 51anti-parallel
Strand 6
C
58 60anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 12first strand
Strand 2
C
118 122parallel
Strand 3
C
92 103anti-parallel
Strand 4
C
107 114anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 135first strand
Strand 2
C
146 156anti-parallel
Strand 3
C
185 195anti-parallel
Strand 4
C
174 176anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 135first strand
Strand 2
C
146 156anti-parallel
Strand 3
C
185 195anti-parallel
Strand 4
C
180 182anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
162 165first strand
Strand 2
C
205 210anti-parallel
Strand 3
C
215 220anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il