Analysis of interatomic Contacts of Structural Units in PDB entry:
3VGO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VGO entry

There are 3 chains in PDB entry 3VGO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 43PRO 339
B
 ARG 43GLU 365
C
 ARG 43GLU 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 55 helices in PDB entry 3VGO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
43 61Right-handed alpha
Helix 2
2
A
62 66Right-handed 310
Helix 3
3
A
73 92Right-handed alpha
Helix 4
4
A
104 129Right-handed alpha
Helix 5
5
A
130 133Right-handed 310
Helix 6
6
A
139 161Right-handed alpha
Helix 7
7
A
167 171Right-handed 310
Helix 8
8
A
175 186Right-handed alpha
Helix 9
9
A
193 205Right-handed alpha
Helix 10
10
A
209 221Right-handed alpha
Helix 11
11
A
229 240Right-handed alpha
Helix 12
12
A
242 244Right-handed 310
Helix 13
13
A
245 255Right-handed alpha
Helix 14
14
A
265 273Right-handed alpha
Helix 15
15
A
274 277Right-handed 310
Helix 16
16
A
289 292Right-handed 310
Helix 17
17
A
315 324Right-handed alpha
Helix 18
18
A
331 335Right-handed 310
Helix 19
19
B
44 61Right-handed alpha
Helix 20
20
B
62 66Right-handed 310
Helix 21
21
B
73 93Right-handed alpha
Helix 22
22
B
100 104Right-handed alpha
Helix 23
23
B
104 129Right-handed alpha
Helix 24
24
B
130 133Right-handed 310
Helix 25
25
B
139 161Right-handed alpha
Helix 26
26
B
162 165Right-handed 310
Helix 27
27
B
167 171Right-handed 310
Helix 28
28
B
175 187Right-handed alpha
Helix 29
29
B
194 205Right-handed alpha
Helix 30
30
B
209 221Right-handed alpha
Helix 31
31
B
230 240Right-handed alpha
Helix 32
32
B
245 254Right-handed alpha
Helix 33
33
B
265 274Right-handed alpha
Helix 34
34
B
275 277Right-handed 310
Helix 35
35
B
315 326Right-handed alpha
Helix 36
36
B
359 365Right-handed alpha
Helix 37
37
C
44 61Right-handed alpha
Helix 38
38
C
62 66Right-handed 310
Helix 39
39
C
76 92Right-handed alpha
Helix 40
40
C
100 104Right-handed alpha
Helix 41
41
C
104 129Right-handed alpha
Helix 42
42
C
130 133Right-handed 310
Helix 43
43
C
139 161Right-handed alpha
Helix 44
44
C
162 165Right-handed 310
Helix 45
45
C
167 171Right-handed 310
Helix 46
46
C
175 186Right-handed alpha
Helix 47
47
C
194 205Right-handed alpha
Helix 48
48
C
209 221Right-handed alpha
Helix 49
49
C
230 240Right-handed alpha
Helix 50
50
C
245 254Right-handed alpha
Helix 51
51
C
265 274Right-handed alpha
Helix 52
52
C
275 277Right-handed 310
Helix 53
53
C
315 326Right-handed alpha
Helix 54
54
C
331 335Right-handed 310
Helix 55
55
C
359 365Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3VGO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 263first strand
Strand 2
A
283 287parallel
Strand 3
A
295 300anti-parallel
Strand 4
A
306 309anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 193first strand
Strand 2
B
227 229anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 263first strand
Strand 2
B
282 287parallel
Strand 3
B
295 300anti-parallel
Strand 4
B
306 309anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 263first strand
Strand 2
B
282 287parallel
Strand 3
B
331 332parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
191 193first strand
Strand 2
C
227 229anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
260 263first strand
Strand 2
C
283 287parallel
Strand 3
C
295 300anti-parallel
Strand 4
C
306 309anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il