Analysis of interatomic Contacts of Structural Units in PDB entry:
3VHX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VHX entry

There are 8 chains in PDB entry 3VHX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 12TYR 173
B
 ASP 695ASN 800
C
 MET 12TYR 173
D
 ASP 695ASN 800
E
 MET 12TYR 173
F
 PRO 699ASN 800
G
 MET 12TYR 173
H
 ASP 713ASN 800
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3VHX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 36Right-handed alpha
Helix 2
2
A
70 78Right-handed 310
Helix 3
3
A
95 108Right-handed alpha
Helix 4
4
A
109 113Right-handed 310
Helix 5
5
A
131 139Right-handed alpha
Helix 6
6
A
161 172Right-handed alpha
Helix 7
7
B
744 751Right-handed alpha
Helix 8
8
C
25 36Right-handed alpha
Helix 9
9
C
70 78Right-handed 310
Helix 10
10
C
95 108Right-handed alpha
Helix 11
11
C
109 113Right-handed 310
Helix 12
12
C
131 139Right-handed alpha
Helix 13
13
C
161 172Right-handed alpha
Helix 14
14
D
744 751Right-handed alpha
Helix 15
15
E
25 36Right-handed alpha
Helix 16
16
E
70 78Right-handed 310
Helix 17
17
E
95 108Right-handed alpha
Helix 18
18
E
109 113Right-handed 310
Helix 19
19
E
131 139Right-handed alpha
Helix 20
20
E
161 172Right-handed alpha
Helix 21
21
F
744 751Right-handed alpha
Helix 22
22
G
25 36Right-handed alpha
Helix 23
23
G
70 78Right-handed 310
Helix 24
24
G
95 108Right-handed alpha
Helix 25
25
G
109 113Right-handed 310
Helix 26
26
G
131 139Right-handed alpha
Helix 27
27
G
161 172Right-handed alpha
Helix 28
28
H
744 751Right-handed alpha
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There are 4 sheets in PDB entry 3VHX. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 153first strand
Strand 2
A
116 122parallel
Strand 3
A
83 89parallel
Strand 4
A
13 19parallel
Strand 5
A
57 64parallel
Strand 6
A
46 54anti-parallel
Strand 7
B
784 795anti-parallel
Strand 8
B
767 778anti-parallel
Strand 9
B
753 761anti-parallel
Strand 10
B
715 718parallel
Strand 11
B
737 740parallel
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There are 11 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
149 153first strand
Strand 2
C
116 122parallel
Strand 3
C
83 89parallel
Strand 4
C
13 19parallel
Strand 5
C
57 64parallel
Strand 6
C
46 54anti-parallel
Strand 7
D
784 795anti-parallel
Strand 8
D
767 778anti-parallel
Strand 9
D
753 761anti-parallel
Strand 10
D
715 718parallel
Strand 11
D
737 740parallel
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There are 11 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
149 153first strand
Strand 2
E
116 122parallel
Strand 3
E
83 89parallel
Strand 4
E
13 20parallel
Strand 5
E
57 64parallel
Strand 6
E
46 54anti-parallel
Strand 7
F
784 795anti-parallel
Strand 8
F
767 778anti-parallel
Strand 9
F
753 761anti-parallel
Strand 10
F
715 718parallel
Strand 11
F
737 740parallel
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There are 11 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
149 154first strand
Strand 2
G
116 122parallel
Strand 3
G
83 89parallel
Strand 4
G
13 19parallel
Strand 5
G
57 64parallel
Strand 6
G
46 54anti-parallel
Strand 7
H
784 795anti-parallel
Strand 8
H
767 778anti-parallel
Strand 9
H
753 761anti-parallel
Strand 10
H
715 718parallel
Strand 11
H
737 740parallel
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