Analysis of interatomic Contacts of Structural Units in PDB entry:
3VI5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VI5 entry

There are 4 chains in PDB entry 3VI5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2LEU 199
B
 PRO 202LEU 399
C
 PRO 402LEU 599
D
 PRO 602LEU 799
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 3VI5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 26Right-handed alpha
Helix 2
2
A
35 37Right-handed 310
Helix 3
3
A
38 44Right-handed alpha
Helix 4
4
A
63 73Right-handed alpha
Helix 5
5
A
81 102Right-handed alpha
Helix 6
6
A
111 123Right-handed alpha
Helix 7
7
A
123 136Right-handed alpha
Helix 8
8
A
147 164Right-handed alpha
Helix 9
9
A
171 184Right-handed alpha
Helix 10
10
A
184 194Right-handed alpha
Helix 11
11
B
215 225Right-handed alpha
Helix 12
12
B
235 237Right-handed 310
Helix 13
13
B
238 244Right-handed alpha
Helix 14
14
B
263 273Right-handed alpha
Helix 15
15
B
281 302Right-handed alpha
Helix 16
16
B
310 322Right-handed alpha
Helix 17
17
B
322 336Right-handed alpha
Helix 18
18
B
347 364Right-handed alpha
Helix 19
19
B
371 383Right-handed alpha
Helix 20
20
B
384 394Right-handed alpha
Helix 21
21
C
412 414Right-handed 310
Helix 22
22
C
415 426Right-handed alpha
Helix 23
23
C
435 437Right-handed 310
Helix 24
24
C
438 444Right-handed alpha
Helix 25
25
C
463 473Right-handed alpha
Helix 26
26
C
481 502Right-handed alpha
Helix 27
27
C
508 523Right-handed alpha
Helix 28
28
C
523 536Right-handed alpha
Helix 29
29
C
547 564Right-handed alpha
Helix 30
30
C
571 584Right-handed alpha
Helix 31
31
C
584 594Right-handed alpha
Helix 32
32
D
612 614Right-handed 310
Helix 33
33
D
615 626Right-handed alpha
Helix 34
34
D
635 637Right-handed 310
Helix 35
35
D
638 644Right-handed alpha
Helix 36
36
D
663 673Right-handed alpha
Helix 37
37
D
681 702Right-handed alpha
Helix 38
38
D
708 723Right-handed alpha
Helix 39
39
D
723 736Right-handed alpha
Helix 40
40
D
747 764Right-handed alpha
Helix 41
41
D
771 784Right-handed alpha
Helix 42
42
D
784 794Right-handed alpha
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There are 4 sheets in PDB entry 3VI5. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
4 9parallel
Strand 3
A
53 56anti-parallel
Strand 4
A
59 62anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 234first strand
Strand 2
B
204 209parallel
Strand 3
B
253 256anti-parallel
Strand 4
B
259 262anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
430 434first strand
Strand 2
C
404 409parallel
Strand 3
C
453 456anti-parallel
Strand 4
C
459 462anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
630 634first strand
Strand 2
D
604 609parallel
Strand 3
D
653 656anti-parallel
Strand 4
D
659 662anti-parallel
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