Analysis of interatomic Contacts of Structural Units in PDB entry:
3VJP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VJP entry

There are 2 chains in PDB entry 3VJP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1LEU 198
B
 GLN 1LEU 198
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 3VJP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 15Right-handed alpha
Helix 2
2
A
102 104Right-handed 310
Helix 3
3
B
2 15Right-handed alpha
Helix 4
4
B
102 104Right-handed 310
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There are 8 sheets in PDB entry 3VJP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 26first strand
Strand 2
A
62 79anti-parallel
Strand 3
A
54 59anti-parallel
Strand 4
A
40 43anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 26first strand
Strand 2
A
62 79anti-parallel
Strand 3
A
94 100anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 120first strand
Strand 2
A
135 137anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 153first strand
Strand 2
A
156 164anti-parallel
Strand 3
A
173 178anti-parallel
Strand 4
A
183 188anti-parallel
Strand 5
A
194 197anti-parallel
Strand 6
A
146 153parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 26first strand
Strand 2
B
62 79anti-parallel
Strand 3
B
54 59anti-parallel
Strand 4
B
40 42anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 26first strand
Strand 2
B
62 79anti-parallel
Strand 3
B
94 100anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 120first strand
Strand 2
B
135 136anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 153first strand
Strand 2
B
156 164anti-parallel
Strand 3
B
173 178anti-parallel
Strand 4
B
183 188anti-parallel
Strand 5
B
194 197anti-parallel
Strand 6
B
146 153parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il