Analysis of interatomic Contacts of Structural Units in PDB entry:
3VLN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VLN entry

There is 1 chain in PDB entry 3VLN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 3LEU 241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3VLN. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
3 7Right-handed 310
Helix 2
2
A
32 46Right-handed alpha
Helix 3
3
A
62 67Right-handed alpha
Helix 4
4
A
85 97Right-handed alpha
Helix 5
5
A
106 121Right-handed alpha
Helix 6
6
A
122 132Right-handed alpha
Helix 7
7
A
135 161Right-handed alpha
Helix 8
8
A
171 185Right-handed alpha
Helix 9
9
A
189 193Right-handed 310
Helix 10
10
A
196 208Right-handed alpha
Helix 11
11
A
209 216Right-handed alpha
Helix 12
12
A
218 230Right-handed alpha
Helix 13
13
A
235 239Right-handed 310
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There is 1 sheet ( A) in PDB entry 3VLN.

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
49 53first strand
Strand 2
A
24 28parallel
Strand 3
A
74 76anti-parallel
Strand 4
A
82 84anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il