Analysis of interatomic Contacts of Structural Units in PDB entry:
3VMM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VMM entry

There is 1 chain in PDB entry 3VMM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2VAL 472
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3VMM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 26Right-handed alpha
Helix 2
2
A
36 40Right-handed 310
Helix 3
3
A
41 51Right-handed alpha
Helix 4
4
A
59 62Right-handed 310
Helix 5
5
A
64 69Right-handed 310
Helix 6
6
A
84 99Right-handed alpha
Helix 7
7
A
108 110Right-handed 310
Helix 8
8
A
111 122Right-handed alpha
Helix 9
9
A
128 135Right-handed alpha
Helix 10
10
A
137 148Right-handed alpha
Helix 11
11
A
160 171Right-handed alpha
Helix 12
12
A
196 209Right-handed alpha
Helix 13
13
A
232 237Right-handed alpha
Helix 14
14
A
283 302Right-handed alpha
Helix 15
15
A
316 318Right-handed 310
Helix 16
16
A
333 343Right-handed alpha
Helix 17
17
A
345 357Right-handed alpha
Helix 18
18
A
358 360Right-handed 310
Helix 19
19
A
380 387Right-handed alpha
Helix 20
20
A
432 436Right-handed 310
Helix 21
21
A
447 462Right-handed alpha
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There are 4 sheets in PDB entry 3VMM. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 57first strand
Strand 2
A
28 34parallel
Strand 3
A
4 9parallel
Strand 4
A
103 106parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 158first strand
Strand 2
A
223 227anti-parallel
Strand 3
A
175 179anti-parallel
Strand 4
A
189 191anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 326first strand
Strand 2
A
306 315anti-parallel
Strand 3
A
245 253anti-parallel
Strand 4
A
256 265anti-parallel
Strand 5
A
275 278anti-parallel
Strand 6
A
373 379anti-parallel
Strand 7
A
439 445anti-parallel
Strand 8
A
414 420anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 427first strand
Strand 2
A
395 403anti-parallel
Strand 3
A
463 469anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il