Analysis of interatomic Contacts of Structural Units in PDB entry:
3VN9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VN9 entry

There is 1 chain in PDB entry 3VN9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 44ASP 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3VN9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
90 105Right-handed alpha
Helix 2
2
A
136 146Right-handed alpha
Helix 3
3
A
151 173Right-handed alpha
Helix 4
4
A
199 205Right-handed alpha
Helix 5
5
A
206 213Right-handed alpha
Helix 6
6
A
221 226Right-handed alpha
Helix 7
7
A
235 253Right-handed alpha
Helix 8
8
A
262 273Right-handed alpha
Helix 9
9
A
279 283Right-handed 310
Helix 10
10
A
284 295Right-handed alpha
Helix 11
11
A
298 302Right-handed 310
Helix 12
12
A
304 309Right-handed alpha
Helix 13
13
A
311 318Right-handed alpha
Helix 14
14
A
324 333Right-handed alpha
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There are 2 sheets in PDB entry 3VN9. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 61first strand
Strand 2
A
65 72anti-parallel
Strand 3
A
77 84anti-parallel
Strand 4
A
125 129anti-parallel
Strand 5
A
115 120anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
185 187anti-parallel
Strand 3
A
193 195anti-parallel
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