Analysis of interatomic Contacts of Structural Units in PDB entry:
3VPG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VPG entry

There are 4 chains in PDB entry 3VPG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 21PHE 330
B
 MET 21PHE 330
C
 MET 21PHE 330
D
 MET 21PHE 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 3VPG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 43Right-handed alpha
Helix 2
2
A
54 67Right-handed alpha
Helix 3
3
A
68 72Right-handed 310
Helix 4
4
A
82 87Right-handed 310
Helix 5
5
A
105 128Right-handed alpha
Helix 6
6
A
139 152Right-handed alpha
Helix 7
7
A
154 156Right-handed 310
Helix 8
8
A
163 179Right-handed alpha
Helix 9
9
A
181 183Right-handed 310
Helix 10
10
A
211 218Right-handed alpha
Helix 11
11
A
222 235Right-handed alpha
Helix 12
12
A
235 245Right-handed alpha
Helix 13
13
A
248 264Right-handed alpha
Helix 14
14
A
307 329Right-handed alpha
Helix 15
15
B
29 42Right-handed alpha
Helix 16
16
B
54 67Right-handed alpha
Helix 17
17
B
68 72Right-handed 310
Helix 18
18
B
82 87Right-handed 310
Helix 19
19
B
105 128Right-handed alpha
Helix 20
20
B
139 152Right-handed alpha
Helix 21
21
B
154 156Right-handed 310
Helix 22
22
B
163 179Right-handed alpha
Helix 23
23
B
181 183Right-handed 310
Helix 24
24
B
211 218Right-handed alpha
Helix 25
25
B
222 235Right-handed alpha
Helix 26
26
B
235 245Right-handed alpha
Helix 27
27
B
248 264Right-handed alpha
Helix 28
28
B
307 329Right-handed alpha
Helix 29
29
C
29 43Right-handed alpha
Helix 30
30
C
54 67Right-handed alpha
Helix 31
31
C
68 72Right-handed 310
Helix 32
32
C
82 87Right-handed 310
Helix 33
33
C
105 128Right-handed alpha
Helix 34
34
C
139 152Right-handed alpha
Helix 35
35
C
154 156Right-handed 310
Helix 36
36
C
163 179Right-handed alpha
Helix 37
37
C
181 183Right-handed 310
Helix 38
38
C
211 218Right-handed alpha
Helix 39
39
C
222 235Right-handed alpha
Helix 40
40
C
235 245Right-handed alpha
Helix 41
41
C
248 264Right-handed alpha
Helix 42
42
C
307 329Right-handed alpha
Helix 43
43
D
29 42Right-handed alpha
Helix 44
44
D
54 67Right-handed alpha
Helix 45
45
D
68 72Right-handed 310
Helix 46
46
D
82 87Right-handed 310
Helix 47
47
D
105 128Right-handed alpha
Helix 48
48
D
139 152Right-handed alpha
Helix 49
49
D
154 156Right-handed 310
Helix 50
50
D
163 179Right-handed alpha
Helix 51
51
D
181 183Right-handed 310
Helix 52
52
D
211 219Right-handed alpha
Helix 53
53
D
222 235Right-handed alpha
Helix 54
54
D
235 245Right-handed alpha
Helix 55
55
D
248 264Right-handed alpha
Helix 56
56
D
307 329Right-handed alpha
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There are 13 sheets in PDB entry 3VPG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
47 51parallel
Strand 3
A
22 26parallel
Strand 4
A
91 94parallel
Strand 5
A
132 135parallel
Strand 6
A
158 160parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 186first strand
Strand 2
A
205 206anti-parallel
Strand 3
A
209 210anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 190first strand
Strand 2
A
198 199anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 279first strand
Strand 2
A
282 294anti-parallel
Strand 3
A
297 301anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 80first strand
Strand 2
B
47 51parallel
Strand 3
B
22 26parallel
Strand 4
B
89 94parallel
Strand 5
B
132 135parallel
Strand 6
B
158 160parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 190first strand
Strand 2
B
198 206anti-parallel
Strand 3
B
209 210anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 279first strand
Strand 2
B
282 294anti-parallel
Strand 3
B
297 301anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 80first strand
Strand 2
C
47 51parallel
Strand 3
C
22 26parallel
Strand 4
C
91 94parallel
Strand 5
C
132 135parallel
Strand 6
C
158 160parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
185 190first strand
Strand 2
C
198 206anti-parallel
Strand 3
C
209 210anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
268 279first strand
Strand 2
C
282 294anti-parallel
Strand 3
C
297 301anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
77 81first strand
Strand 2
D
47 51parallel
Strand 3
D
22 26parallel
Strand 4
D
91 94parallel
Strand 5
D
132 135parallel
Strand 6
D
158 160parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
185 190first strand
Strand 2
D
198 206anti-parallel
Strand 3
D
209 210anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
268 279first strand
Strand 2
D
282 294anti-parallel
Strand 3
D
297 301anti-parallel
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