Analysis of interatomic Contacts of Structural Units in PDB entry:
3VQX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VQX entry

There are 4 chains in PDB entry 3VQX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 191LEU 454
B
 PRO 188LEU 454
C
 LEU 190LEU 454
D
 THR 191LEU 454
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 3VQX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
191 202Right-handed alpha
Helix 2
2
A
215 238Right-handed alpha
Helix 3
3
A
241 257Right-handed alpha
Helix 4
4
A
270 276Right-handed alpha
Helix 5
5
A
301 313Right-handed alpha
Helix 6
6
A
355 370Right-handed alpha
Helix 7
7
A
405 412Right-handed 310
Helix 8
8
A
424 432Right-handed alpha
Helix 9
9
A
436 440Right-handed 310
Helix 10
10
B
191 202Right-handed alpha
Helix 11
11
B
215 237Right-handed alpha
Helix 12
12
B
241 257Right-handed alpha
Helix 13
13
B
270 276Right-handed alpha
Helix 14
14
B
301 313Right-handed alpha
Helix 15
15
B
355 371Right-handed alpha
Helix 16
16
B
405 412Right-handed 310
Helix 17
17
B
424 433Right-handed alpha
Helix 18
18
B
436 440Right-handed 310
Helix 19
19
C
191 202Right-handed alpha
Helix 20
20
C
215 238Right-handed alpha
Helix 21
21
C
241 256Right-handed alpha
Helix 22
22
C
270 276Right-handed alpha
Helix 23
23
C
301 313Right-handed alpha
Helix 24
24
C
355 371Right-handed alpha
Helix 25
25
C
405 412Right-handed 310
Helix 26
26
C
424 433Right-handed alpha
Helix 27
27
C
436 441Right-handed 310
Helix 28
28
D
192 202Right-handed alpha
Helix 29
29
D
215 237Right-handed alpha
Helix 30
30
D
241 257Right-handed alpha
Helix 31
31
D
270 276Right-handed alpha
Helix 32
32
D
284 288Right-handed 310
Helix 33
33
D
301 313Right-handed alpha
Helix 34
34
D
355 371Right-handed alpha
Helix 35
35
D
406 411Right-handed alpha
Helix 36
36
D
424 432Right-handed alpha
Helix 37
37
D
436 440Right-handed 310
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There are 12 sheets in PDB entry 3VQX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 262first strand
Strand 2
A
320 329parallel
Strand 3
A
341 350anti-parallel
Strand 4
A
417 423anti-parallel
Strand 5
A
395 402anti-parallel
Strand 6
A
385 392anti-parallel
Strand 7
A
375 381anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 269first strand
Strand 2
A
295 297anti-parallel
Strand 3
A
290 291anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 447first strand
Strand 2
A
450 451anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 262first strand
Strand 2
B
320 329parallel
Strand 3
B
341 350anti-parallel
Strand 4
B
417 423anti-parallel
Strand 5
B
395 402anti-parallel
Strand 6
B
388 392anti-parallel
Strand 7
B
375 377anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
267 269first strand
Strand 2
B
295 297anti-parallel
Strand 3
B
290 291anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
446 447first strand
Strand 2
B
450 451anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
260 262first strand
Strand 2
C
320 329parallel
Strand 3
C
341 350anti-parallel
Strand 4
C
417 423anti-parallel
Strand 5
C
395 402anti-parallel
Strand 6
C
386 392anti-parallel
Strand 7
C
375 376anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
267 269first strand
Strand 2
C
295 297anti-parallel
Strand 3
C
290 291anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
446 447first strand
Strand 2
C
450 451anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
260 262first strand
Strand 2
D
320 329parallel
Strand 3
D
341 350anti-parallel
Strand 4
D
417 423anti-parallel
Strand 5
D
395 402anti-parallel
Strand 6
D
386 392anti-parallel
Strand 7
D
375 379anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
267 269first strand
Strand 2
D
295 297anti-parallel
Strand 3
D
289 291anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
446 447first strand
Strand 2
D
450 451anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il