Analysis of interatomic Contacts of Structural Units in PDB entry:
3VQY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VQY entry

There is 1 chain in PDB entry 3VQY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 188LEU 454
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3VQY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
191 202Right-handed alpha
Helix 2
2
A
215 237Right-handed alpha
Helix 3
3
A
241 257Right-handed alpha
Helix 4
4
A
270 276Right-handed alpha
Helix 5
5
A
283 287Right-handed 310
Helix 6
6
A
301 314Right-handed alpha
Helix 7
7
A
355 371Right-handed alpha
Helix 8
8
A
405 412Right-handed 310
Helix 9
9
A
424 433Right-handed alpha
Helix 10
10
A
436 440Right-handed 310
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There are 3 sheets in PDB entry 3VQY. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 262first strand
Strand 2
A
320 329parallel
Strand 3
A
341 350anti-parallel
Strand 4
A
417 423anti-parallel
Strand 5
A
395 402anti-parallel
Strand 6
A
386 392anti-parallel
Strand 7
A
375 377anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 269first strand
Strand 2
A
295 297anti-parallel
Strand 3
A
290 291anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 447first strand
Strand 2
A
450 451anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il