Analysis of interatomic Contacts of Structural Units in PDB entry:
3VRH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VRH entry

There is 1 chain in PDB entry 3VRH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 3VRH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 41Right-handed alpha
Helix 2
2
A
57 70Right-handed alpha
Helix 3
3
A
86 102Right-handed alpha
Helix 4
4
A
110 115Right-handed alpha
Helix 5
5
A
126 146Right-handed alpha
Helix 6
6
A
156 170Right-handed alpha
Helix 7
7
A
172 178Right-handed alpha
Helix 8
8
A
200 212Right-handed alpha
Helix 9
9
A
228 242Right-handed alpha
Helix 10
10
A
244 257Right-handed alpha
Helix 11
11
A
258 261Right-handed 310
Helix 12
12
A
284 291Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3VRH. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 14first strand
Strand 2
A
19 21anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 109first strand
Strand 2
A
73 80parallel
Strand 3
A
49 53parallel
Strand 4
A
150 152parallel
Strand 5
A
191 193parallel
Strand 6
A
182 183anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il