Analysis of interatomic Contacts of Structural Units in PDB entry:
3VRY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VRY entry

There are 4 chains in PDB entry 3VRY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ARG 85GLN 526
A
GLU 528PRO 531
B
ARG 85GLN 526
B
GLU 528PRO 531
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 3VRY. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
143 147Right-handed 310
Helix 2
2
A
155 164Right-handed alpha
Helix 3
3
A
223 233Right-handed alpha
Helix 4
4
A
263 265Right-handed 310
Helix 5
5
A
303 316Right-handed alpha
Helix 6
6
A
345 351Right-handed alpha
Helix 7
7
A
352 357Right-handed alpha
Helix 8
8
A
359 380Right-handed alpha
Helix 9
9
A
388 390Right-handed 310
Helix 10
10
A
425 429Right-handed 310
Helix 11
11
A
430 437Right-handed alpha
Helix 12
12
A
440 457Right-handed alpha
Helix 13
13
A
467 478Right-handed alpha
Helix 14
14
A
488 499Right-handed alpha
Helix 15
15
A
502 506Right-handed 310
Helix 16
16
A
508 518Right-handed alpha
Helix 17
17
A
522 526Right-handed 310
Helix 18
18
B
143 147Right-handed 310
Helix 19
19
B
155 164Right-handed alpha
Helix 20
20
B
223 232Right-handed alpha
Helix 21
21
B
263 265Right-handed 310
Helix 22
22
B
303 317Right-handed alpha
Helix 23
23
B
345 352Right-handed alpha
Helix 24
24
B
352 357Right-handed alpha
Helix 25
25
B
359 380Right-handed alpha
Helix 26
26
B
388 390Right-handed 310
Helix 27
27
B
430 437Right-handed alpha
Helix 28
28
B
440 457Right-handed alpha
Helix 29
29
B
467 477Right-handed alpha
Helix 30
30
B
488 499Right-handed alpha
Helix 31
31
B
502 506Right-handed 310
Helix 32
32
B
508 518Right-handed alpha
Helix 33
33
B
522 526Right-handed 310
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There are 9 sheets in PDB entry 3VRY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
130 134first strand
Strand 2
A
119 124anti-parallel
Strand 3
A
109 115anti-parallel
Strand 4
A
87 90anti-parallel
Strand 5
A
138 140anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
150 151first strand
Strand 2
A
173 177parallel
Strand 3
A
185 193anti-parallel
Strand 4
A
197 205anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
214 216first strand
Strand 2
A
219 220anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
267 275first strand
Strand 2
A
279 286anti-parallel
Strand 3
A
290 297anti-parallel
Strand 4
A
335 339anti-parallel
Strand 5
A
325 329anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
392 394first strand
Strand 2
A
400 402anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
130 134first strand
Strand 2
B
119 124anti-parallel
Strand 3
B
109 116anti-parallel
Strand 4
B
87 90anti-parallel
Strand 5
B
138 140anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
150 151first strand
Strand 2
B
173 177parallel
Strand 3
B
185 193anti-parallel
Strand 4
B
197 207anti-parallel
Strand 5
B
213 216anti-parallel
Strand 6
B
219 221anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
267 276first strand
Strand 2
B
279 286anti-parallel
Strand 3
B
290 297anti-parallel
Strand 4
B
335 338anti-parallel
Strand 5
B
325 329anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
392 394first strand
Strand 2
B
400 402anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il