Analysis of interatomic Contacts of Structural Units in PDB entry:
3VU1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3VU1 entry

There are 2 chains in PDB entry 3VU1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 487	HIS 986
B	THR 486	SER 975

There are 22 helices in PDB entry 3VU1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	492	504	Right-handed alpha
Helix 2	2	A	539	550	Right-handed alpha
Helix 3	3	A	552	556	Right-handed 310
Helix 4	4	A	558	563	Right-handed 310
Helix 5	5	A	572	575	Right-handed 310
Helix 6	6	A	576	584	Right-handed alpha
Helix 7	7	A	588	594	Right-handed alpha
Helix 8	8	A	687	689	Right-handed 310
Helix 9	9	A	691	699	Right-handed alpha
Helix 10	10	A	707	715	Right-handed alpha
Helix 11	11	A	927	941	Right-handed alpha
Helix 12	12	B	492	504	Right-handed alpha
Helix 13	13	B	538	550	Right-handed alpha
Helix 14	14	B	552	556	Right-handed 310
Helix 15	15	B	558	563	Right-handed 310
Helix 16	16	B	572	575	Right-handed 310
Helix 17	17	B	576	584	Right-handed alpha
Helix 18	18	B	588	594	Right-handed alpha
Helix 19	19	B	687	689	Right-handed 310
Helix 20	20	B	691	699	Right-handed alpha
Helix 21	21	B	707	715	Right-handed alpha
Helix 22	22	B	928	941	Right-handed alpha

There are 11 sheets in PDB entry 3VU1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	510	512	first strand
Strand 2	A	566	570	parallel
Strand 3	A	725	730	anti-parallel
Strand 4	A	716	722	anti-parallel

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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	656	659	first strand
Strand 2	A	648	651	anti-parallel
Strand 3	A	672	676	parallel
Strand 4	A	680	685	anti-parallel
Strand 5	A	605	610	anti-parallel
Strand 6	A	614	617	anti-parallel
Strand 7	A	622	628	anti-parallel
Strand 8	A	633	639	anti-parallel
Strand 9	A	642	645	anti-parallel
Strand 10	A	663	664	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	745	748	first strand
Strand 2	A	733	742	anti-parallel
Strand 3	A	755	765	anti-parallel
Strand 4	A	805	811	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	784	797	first strand
Strand 2	A	770	781	anti-parallel
Strand 3	A	816	827	anti-parallel
Strand 4	A	944	967	anti-parallel
Strand 5	A	865	881	anti-parallel
Strand 6	A	892	911	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	829	830	first strand
Strand 2	A	852	861	anti-parallel
Strand 3	A	834	836	anti-parallel
Strand 4	A	839	841	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	829	830	first strand
Strand 2	A	852	861	anti-parallel
Strand 3	A	914	923	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	510	512	first strand
Strand 2	B	566	570	parallel
Strand 3	B	725	730	anti-parallel
Strand 4	B	716	722	anti-parallel

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There are 10 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	656	659	first strand
Strand 2	B	648	651	anti-parallel
Strand 3	B	672	676	parallel
Strand 4	B	680	685	anti-parallel
Strand 5	B	605	611	anti-parallel
Strand 6	B	614	617	anti-parallel
Strand 7	B	622	628	anti-parallel
Strand 8	B	633	639	anti-parallel
Strand 9	B	642	645	anti-parallel
Strand 10	B	663	664	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	745	748	first strand
Strand 2	B	733	742	anti-parallel
Strand 3	B	755	765	anti-parallel
Strand 4	B	805	811	anti-parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	784	797	first strand
Strand 2	B	770	781	anti-parallel
Strand 3	B	816	827	anti-parallel
Strand 4	B	944	967	anti-parallel
Strand 5	B	867	881	anti-parallel
Strand 6	B	892	909	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	839	841	first strand
Strand 2	B	829	836	anti-parallel
Strand 3	B	852	861	anti-parallel
Strand 4	B	914	923	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3VU1

Analysis of interatomic Contacts of Structural Units in PDB entry:
3VU1