Analysis of interatomic Contacts of Structural Units in PDB entry:
3VWS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VWS entry

There is 1 chain in PDB entry 3VWS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 272MET 883
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3VWS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
272 287Right-handed alpha
Helix 2
2
A
321 328Right-handed alpha
Helix 3
3
A
329 332Right-handed 310
Helix 4
4
A
334 343Right-handed alpha
Helix 5
5
A
355 360Right-handed 310
Helix 6
6
A
366 385Right-handed alpha
Helix 7
7
A
394 407Right-handed alpha
Helix 8
8
A
420 427Right-handed alpha
Helix 9
9
A
427 443Right-handed alpha
Helix 10
10
A
470 489Right-handed alpha
Helix 11
11
A
489 494Right-handed alpha
Helix 12
12
A
498 503Right-handed alpha
Helix 13
13
A
510 523Right-handed alpha
Helix 14
14
A
536 541Right-handed 310
Helix 15
15
A
542 550Right-handed alpha
Helix 16
16
A
551 556Right-handed 310
Helix 17
17
A
557 571Right-handed alpha
Helix 18
18
A
604 625Right-handed alpha
Helix 19
19
A
629 635Right-handed alpha
Helix 20
20
A
640 656Right-handed alpha
Helix 21
21
A
671 677Right-handed 310
Helix 22
22
A
678 684Right-handed alpha
Helix 23
23
A
702 706Right-handed 310
Helix 24
24
A
730 739Right-handed alpha
Helix 25
25
A
747 766Right-handed alpha
Helix 26
26
A
769 783Right-handed alpha
Helix 27
27
A
808 818Right-handed alpha
Helix 28
28
A
832 836Right-handed 310
Helix 29
29
A
840 847Right-handed alpha
Helix 30
30
A
853 875Right-handed alpha
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There are 4 sheets in PDB entry 3VWS. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 310first strand
Strand 2
A
587 594anti-parallel
Strand 3
A
575 582anti-parallel
Strand 4
A
451 454parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 320first strand
Strand 2
A
740 741anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
658 661first strand
Strand 2
A
664 667anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
712 717first strand
Strand 2
A
723 728anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il