Analysis of interatomic Contacts of Structural Units in PDB entry:
3VWX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VWX entry

There are 4 chains in PDB entry 3VWX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3ILE 220
B
 LYS 3ILE 220
C
 LYS 3PRO 222
D
 LYS 3PRO 222
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 3VWX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 25Right-handed alpha
Helix 2
2
A
35 42Right-handed 310
Helix 3
3
A
43 50Right-handed alpha
Helix 4
4
A
67 80Right-handed alpha
Helix 5
5
A
89 106Right-handed alpha
Helix 6
6
A
112 123Right-handed alpha
Helix 7
7
A
128 146Right-handed alpha
Helix 8
8
A
158 172Right-handed alpha
Helix 9
9
A
182 194Right-handed alpha
Helix 10
10
A
197 202Right-handed alpha
Helix 11
11
A
202 215Right-handed alpha
Helix 12
12
B
12 25Right-handed alpha
Helix 13
13
B
35 42Right-handed 310
Helix 14
14
B
43 50Right-handed alpha
Helix 15
15
B
67 80Right-handed alpha
Helix 16
16
B
89 106Right-handed alpha
Helix 17
17
B
112 123Right-handed alpha
Helix 18
18
B
128 146Right-handed alpha
Helix 19
19
B
158 172Right-handed alpha
Helix 20
20
B
182 194Right-handed alpha
Helix 21
21
B
197 202Right-handed alpha
Helix 22
22
B
202 215Right-handed alpha
Helix 23
23
C
12 25Right-handed alpha
Helix 24
24
C
35 42Right-handed 310
Helix 25
25
C
43 50Right-handed alpha
Helix 26
26
C
67 80Right-handed alpha
Helix 27
27
C
89 106Right-handed alpha
Helix 28
28
C
112 123Right-handed alpha
Helix 29
29
C
129 146Right-handed alpha
Helix 30
30
C
158 172Right-handed alpha
Helix 31
31
C
182 194Right-handed alpha
Helix 32
32
C
197 202Right-handed alpha
Helix 33
33
C
202 216Right-handed alpha
Helix 34
34
D
12 25Right-handed alpha
Helix 35
35
D
35 42Right-handed 310
Helix 36
36
D
43 50Right-handed alpha
Helix 37
37
D
67 80Right-handed alpha
Helix 38
38
D
89 106Right-handed alpha
Helix 39
39
D
112 123Right-handed alpha
Helix 40
40
D
129 146Right-handed alpha
Helix 41
41
D
158 172Right-handed alpha
Helix 42
42
D
182 194Right-handed alpha
Helix 43
43
D
197 202Right-handed alpha
Helix 44
44
D
202 215Right-handed alpha
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There are 6 sheets in PDB entry 3VWX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 33first strand
Strand 2
A
4 8parallel
Strand 3
A
57 60anti-parallel
Strand 4
A
63 66anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 33first strand
Strand 2
B
4 8parallel
Strand 3
B
57 60anti-parallel
Strand 4
B
63 66anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 33first strand
Strand 2
C
5 8parallel
Strand 3
C
57 60anti-parallel
Strand 4
C
63 66anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
126 128first strand
Strand 2
C
219 221parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
30 33first strand
Strand 2
D
5 8parallel
Strand 3
D
57 60anti-parallel
Strand 4
D
63 66anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
126 128first strand
Strand 2
D
219 221parallel
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