Analysis of interatomic Contacts of Structural Units in PDB entry:
3VXR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VXR entry

There are 5 chains in PDB entry 3VXR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 1TRP 274
B
MET 0MET 99
D
LYS 1ILE 194
E
THR 2ASP 243
C
ARG 1PHE 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3VXR. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
49 55Right-handed 310
Helix 2
2
A
56 85Right-handed alpha
Helix 3
3
A
137 150Right-handed alpha
Helix 4
4
A
152 162Right-handed alpha
Helix 5
5
A
162 175Right-handed alpha
Helix 6
6
A
175 180Right-handed alpha
Helix 7
7
A
253 255Right-handed 310
Helix 8
8
D
81 85Right-handed 310
Helix 9
9
D
165 168Right-handed 310
Helix 10
10
D
184 189Right-handed alpha
Helix 11
11
E
83 87Right-handed 310
Helix 12
12
E
130 138Right-handed alpha
Helix 13
13
E
197 202Right-handed alpha
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There are 18 sheets in PDB entry 3VXR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
46 47first strand
Strand 2
A
31 37anti-parallel
Strand 3
A
21 28anti-parallel
Strand 4
A
3 12anti-parallel
Strand 5
A
94 103anti-parallel
Strand 6
A
109 118anti-parallel
Strand 7
A
121 126anti-parallel
Strand 8
A
133 135anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
186 192first strand
Strand 2
A
198 208anti-parallel
Strand 3
A
241 250anti-parallel
Strand 4
A
228 230anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
186 192first strand
Strand 2
A
198 208anti-parallel
Strand 3
A
241 250anti-parallel
Strand 4
A
234 235anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
222 223first strand
Strand 2
A
214 219anti-parallel
Strand 3
A
257 262anti-parallel
Strand 4
A
270 272anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
50 51anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
55 56anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
44 45first strand
Strand 2
B
36 41anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
91 94anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
4 7first strand
Strand 2
D
19 25anti-parallel
Strand 3
D
72 77anti-parallel
Strand 4
D
62 67anti-parallel
Strand 5
D
56 59anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
10 14first strand
Strand 2
D
106 111parallel
Strand 3
D
86 94anti-parallel
Strand 4
D
30 38anti-parallel
Strand 5
D
44 51anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
10 14first strand
Strand 2
D
106 111parallel
Strand 3
D
86 94anti-parallel
Strand 4
D
101 102anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
120 125first strand
Strand 2
D
133 138anti-parallel
Strand 3
D
169 178anti-parallel
Strand 4
D
154 156anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
120 125first strand
Strand 2
D
133 138anti-parallel
Strand 3
D
169 178anti-parallel
Strand 4
D
160 164anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
5 7first strand
Strand 2
E
19 24anti-parallel
Strand 3
E
75 79anti-parallel
Strand 4
E
65 68anti-parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
10 14first strand
Strand 2
E
108 113parallel
Strand 3
E
88 95anti-parallel
Strand 4
E
31 37anti-parallel
Strand 5
E
44 50anti-parallel
Strand 6
E
53 57anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
10 14first strand
Strand 2
E
108 113parallel
Strand 3
E
88 95anti-parallel
Strand 4
E
102 104anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
123 127first strand
Strand 2
E
139 149anti-parallel
Strand 3
E
187 196anti-parallel
Strand 4
E
169 171anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
123 127first strand
Strand 2
E
139 149anti-parallel
Strand 3
E
187 196anti-parallel
Strand 4
E
176 177anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
163 165first strand
Strand 2
E
154 160anti-parallel
Strand 3
E
206 213anti-parallel
Strand 4
E
232 239anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il