Analysis of interatomic Contacts of Structural Units in PDB entry:
3VYT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VYT entry

There are 3 chains in PDB entry 3VYT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3ASP 54
B
 PRO 4LEU 371
C
 GLU 3CYS 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 3VYT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
5 9Right-handed 310
Helix 2
2
B
10 27Right-handed alpha
Helix 3
3
B
38 48Right-handed alpha
Helix 4
4
B
49 54Right-handed 310
Helix 5
5
B
72 89Right-handed alpha
Helix 6
6
B
98 104Right-handed alpha
Helix 7
7
B
110 116Right-handed alpha
Helix 8
8
B
126 137Right-handed alpha
Helix 9
9
B
149 166Right-handed alpha
Helix 10
10
B
179 190Right-handed alpha
Helix 11
11
B
200 208Right-handed alpha
Helix 12
12
B
209 219Right-handed alpha
Helix 13
13
B
229 246Right-handed alpha
Helix 14
14
B
264 273Right-handed alpha
Helix 15
15
B
297 307Right-handed 310
Helix 16
16
B
324 330Right-handed alpha
Helix 17
17
B
334 338Right-handed 310
Helix 18
18
B
352 357Right-handed alpha
Helix 19
19
B
360 369Right-handed alpha
Helix 20
20
C
6 11Right-handed 310
Helix 21
21
C
13 23Right-handed alpha
Helix 22
22
C
23 28Right-handed alpha
Helix 23
23
C
37 41Right-handed 310
Helix 24
24
C
73 87Right-handed alpha
Helix 25
25
C
106 124Right-handed alpha
Helix 26
26
C
174 185Right-handed alpha
Helix 27
27
C
200 212Right-handed alpha
Helix 28
28
C
225 239Right-handed alpha
Helix 29
29
C
247 249Right-handed 310
Helix 30
30
C
252 263Right-handed alpha
Helix 31
31
C
283 293Right-handed alpha
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There are 7 sheets in PDB entry 3VYT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 13first strand
Strand 2
A
16 20anti-parallel
Strand 3
A
25 29anti-parallel
Strand 4
A
48 52parallel
Strand 5
A
41 45anti-parallel
Strand 6
A
5 13anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 62first strand
Strand 2
B
32 36parallel
Strand 3
B
196 198parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 123first strand
Strand 2
B
93 97parallel
Strand 3
B
141 148parallel
Strand 4
B
171 178parallel
Strand 5
B
286 295anti-parallel
Strand 6
B
275 282anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 225first strand
Strand 2
B
251 253parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 49first strand
Strand 2
C
52 61anti-parallel
Strand 3
C
142 152anti-parallel
Strand 4
C
91 102anti-parallel
Strand 5
C
128 136parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
67 68first strand
Strand 2
C
71 72anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
216 220first strand
Strand 2
C
276 279anti-parallel
Strand 3
C
166 169anti-parallel
Strand 4
C
301 307anti-parallel
Strand 5
C
241 245anti-parallel
Strand 6
C
314 317parallel
Strand 7
C
323 325anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il