Analysis of interatomic Contacts of Structural Units in PDB entry:
3WDG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WDG entry

There are 2 chains in PDB entry 3WDG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 216
B
 MET 1GLY 110
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3WDG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 14Right-handed alpha
Helix 2
2
A
16 30Right-handed alpha
Helix 3
3
A
35 39Right-handed 310
Helix 4
4
A
40 46Right-handed alpha
Helix 5
5
A
47 51Right-handed 310
Helix 6
6
A
81 95Right-handed alpha
Helix 7
7
A
104 110Right-handed alpha
Helix 8
8
A
133 149Right-handed alpha
Helix 9
9
A
158 163Right-handed alpha
Helix 10
10
A
164 168Right-handed 310
Helix 11
11
A
194 206Right-handed alpha
Helix 12
12
B
2 16Right-handed alpha
Helix 13
13
B
33 35Right-handed 310
Helix 14
14
B
37 41Right-handed 310
Helix 15
15
B
58 64Right-handed alpha
Helix 16
16
B
105 109Right-handed 310
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There are 3 sheets in PDB entry 3WDG. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
121 122anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 116first strand
Strand 2
A
53 57parallel
Strand 3
A
153 157parallel
Strand 4
A
174 178parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 31first strand
Strand 2
B
50 57anti-parallel
Strand 3
B
67 73anti-parallel
Strand 4
B
76 83anti-parallel
Strand 5
B
89 95anti-parallel
Strand 6
B
100 103anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il