Analysis of interatomic Contacts of Structural Units in PDB entry:
3XIM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3XIM entry

There are 4 chains in PDB entry 3XIM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 4ARG 394
B
 VAL 3ARG 394
C
 ALA 5ARG 394
D
 VAL 3ARG 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 85 helices in PDB entry 3XIM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 9Right-handed 310
Helix 2
2
A
15 19Right-handed alpha
Helix 3
3
A
35 47Right-handed alpha
Helix 4
4
A
54 59Right-handed alpha
Helix 5
5
A
64 83Right-handed alpha
Helix 6
6
A
96 100Right-handed 310
Helix 7
7
A
108 130Right-handed alpha
Helix 8
8
A
145 149Right-handed 310
Helix 9
9
A
150 173Right-handed alpha
Helix 10
10
A
195 204Right-handed alpha
Helix 11
11
A
208 210Right-handed 310
Helix 12
12
A
217 223Right-handed alpha
Helix 13
13
A
227 239Right-handed alpha
Helix 14
14
A
264 277Right-handed alpha
Helix 15
15
A
278 282Right-handed 310
Helix 16
16
A
300 328Right-handed alpha
Helix 17
17
A
328 338Right-handed alpha
Helix 18
18
A
339 345Right-handed 310
Helix 19
19
A
353 360Right-handed alpha
Helix 20
20
A
361 364Right-handed 310
Helix 21
21
A
368 374Right-handed alpha
Helix 22
22
A
378 391Right-handed alpha
Helix 23
23
B
6 9Right-handed 310
Helix 24
24
B
15 19Right-handed alpha
Helix 25
25
B
35 47Right-handed alpha
Helix 26
26
B
54 59Right-handed alpha
Helix 27
27
B
64 83Right-handed alpha
Helix 28
28
B
96 100Right-handed 310
Helix 29
29
B
108 130Right-handed alpha
Helix 30
30
B
145 149Right-handed 310
Helix 31
31
B
150 173Right-handed alpha
Helix 32
32
B
195 204Right-handed alpha
Helix 33
33
B
208 210Right-handed 310
Helix 34
34
B
217 223Right-handed alpha
Helix 35
35
B
227 238Right-handed alpha
Helix 36
36
B
264 277Right-handed alpha
Helix 37
37
B
300 328Right-handed alpha
Helix 38
38
B
328 338Right-handed alpha
Helix 39
39
B
339 344Right-handed 310
Helix 40
40
B
353 360Right-handed alpha
Helix 41
41
B
361 364Right-handed 310
Helix 42
42
B
368 374Right-handed alpha
Helix 43
43
B
378 391Right-handed alpha
Helix 44
44
C
6 9Right-handed 310
Helix 45
45
C
15 19Right-handed alpha
Helix 46
46
C
35 47Right-handed alpha
Helix 47
47
C
54 59Right-handed alpha
Helix 48
48
C
64 83Right-handed alpha
Helix 49
49
C
96 100Right-handed 310
Helix 50
50
C
108 130Right-handed alpha
Helix 51
51
C
145 149Right-handed 310
Helix 52
52
C
150 172Right-handed alpha
Helix 53
53
C
195 204Right-handed alpha
Helix 54
54
C
208 210Right-handed 310
Helix 55
55
C
217 223Right-handed alpha
Helix 56
56
C
227 238Right-handed alpha
Helix 57
57
C
264 277Right-handed alpha
Helix 58
58
C
300 328Right-handed alpha
Helix 59
59
C
328 338Right-handed alpha
Helix 60
60
C
339 345Right-handed 310
Helix 61
61
C
353 360Right-handed alpha
Helix 62
62
C
361 364Right-handed 310
Helix 63
63
C
368 373Right-handed alpha
Helix 64
64
C
378 391Right-handed alpha
Helix 65
65
D
6 9Right-handed 310
Helix 66
66
D
15 19Right-handed alpha
Helix 67
67
D
35 47Right-handed alpha
Helix 68
68
D
54 59Right-handed alpha
Helix 69
69
D
64 83Right-handed alpha
Helix 70
70
D
96 100Right-handed 310
Helix 71
71
D
108 130Right-handed alpha
Helix 72
72
D
145 149Right-handed 310
Helix 73
73
D
150 173Right-handed alpha
Helix 74
74
D
195 204Right-handed alpha
Helix 75
75
D
208 210Right-handed 310
Helix 76
76
D
217 223Right-handed alpha
Helix 77
77
D
227 239Right-handed alpha
Helix 78
78
D
264 278Right-handed alpha
Helix 79
79
D
300 327Right-handed alpha
Helix 80
80
D
328 339Right-handed alpha
Helix 81
81
D
340 345Right-handed 310
Helix 82
82
D
353 360Right-handed alpha
Helix 83
83
D
361 364Right-handed 310
Helix 84
84
D
368 374Right-handed alpha
Helix 85
85
D
378 391Right-handed alpha
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There are 12 sheets in PDB entry 3XIM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
11 14parallel
Strand 3
A
289 291parallel
Strand 4
A
245 246parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 90first strand
Strand 2
A
133 137parallel
Strand 3
A
177 181parallel
Strand 4
A
212 214parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
190 191anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 52first strand
Strand 2
B
11 14parallel
Strand 3
B
289 291parallel
Strand 4
B
245 246parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 90first strand
Strand 2
B
133 137parallel
Strand 3
B
177 181parallel
Strand 4
B
212 214parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 143first strand
Strand 2
B
190 191anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 52first strand
Strand 2
C
11 14parallel
Strand 3
C
289 291parallel
Strand 4
C
245 246parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
88 90first strand
Strand 2
C
133 137parallel
Strand 3
C
177 181parallel
Strand 4
C
212 214parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
142 143first strand
Strand 2
C
190 191anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
50 52first strand
Strand 2
D
11 14parallel
Strand 3
D
289 291parallel
Strand 4
D
245 246parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
88 89first strand
Strand 2
D
133 136parallel
Strand 3
D
177 180parallel
Strand 4
D
212 214parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
142 143first strand
Strand 2
D
190 191anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il