Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZDF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ZDF entry

There are 4 chains in PDB entry 3ZDF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0ALA 337
B
 SER 0ALA 337
C
 THR 55ASP 75
D
 HIS 53ASP 75
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 3ZDF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 23Right-handed alpha
Helix 2
2
A
24 27Right-handed 310
Helix 3
3
A
39 49Right-handed alpha
Helix 4
4
A
82 86Right-handed 310
Helix 5
5
A
87 92Right-handed alpha
Helix 6
6
A
105 110Right-handed alpha
Helix 7
7
A
110 115Right-handed alpha
Helix 8
8
A
138 142Right-handed 310
Helix 9
9
A
153 171Right-handed alpha
Helix 10
10
A
213 222Right-handed alpha
Helix 11
11
A
223 226Right-handed 310
Helix 12
12
A
255 269Right-handed alpha
Helix 13
13
A
283 288Right-handed 310
Helix 14
14
A
299 301Right-handed 310
Helix 15
15
A
318 334Right-handed alpha
Helix 16
16
B
10 23Right-handed alpha
Helix 17
17
B
24 27Right-handed 310
Helix 18
18
B
39 49Right-handed alpha
Helix 19
19
B
82 86Right-handed 310
Helix 20
20
B
105 115Right-handed alpha
Helix 21
21
B
138 142Right-handed 310
Helix 22
22
B
153 171Right-handed alpha
Helix 23
23
B
202 206Right-handed 310
Helix 24
24
B
213 222Right-handed alpha
Helix 25
25
B
223 226Right-handed 310
Helix 26
26
B
255 269Right-handed alpha
Helix 27
27
B
283 288Right-handed 310
Helix 28
28
B
299 301Right-handed 310
Helix 29
29
B
318 335Right-handed alpha
Helix 30
30
C
55 64Right-handed alpha
Helix 31
31
D
55 64Right-handed alpha
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There are 8 sheets in PDB entry 3ZDF. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
67 70anti-parallel
Strand 3
A
73 78anti-parallel
Strand 4
A
29 35parallel
Strand 5
A
2 7parallel
Strand 6
A
95 98parallel
Strand 7
A
119 122parallel
Strand 8
A
148 150parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 211first strand
Strand 2
A
229 236anti-parallel
Strand 3
A
172 182parallel
Strand 4
A
242 250anti-parallel
Strand 5
A
308 315anti-parallel
Strand 6
A
302 304parallel
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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 211first strand
Strand 2
A
229 236anti-parallel
Strand 3
A
172 182parallel
Strand 4
A
242 250anti-parallel
Strand 5
A
308 315anti-parallel
Strand 6
A
294 297anti-parallel
Strand 7
A
275 278parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 304first strand
Strand 2
A
308 315parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
67 70anti-parallel
Strand 3
B
73 78anti-parallel
Strand 4
B
29 35parallel
Strand 5
B
2 7parallel
Strand 6
B
95 98parallel
Strand 7
B
119 122parallel
Strand 8
B
148 150parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 211first strand
Strand 2
B
229 236anti-parallel
Strand 3
B
172 182parallel
Strand 4
B
242 250anti-parallel
Strand 5
B
308 315anti-parallel
Strand 6
B
302 304parallel
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There are 7 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 211first strand
Strand 2
B
229 236anti-parallel
Strand 3
B
172 182parallel
Strand 4
B
242 250anti-parallel
Strand 5
B
308 315anti-parallel
Strand 6
B
294 297anti-parallel
Strand 7
B
275 278parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
302 304first strand
Strand 2
B
308 315parallel
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