Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZDI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ZDI entry

There are 3 chains in PDB entry 3ZDI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 36SER 215
A
ILE 217ILE 384
B
GLU 422GLN 438
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3ZDI. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
95 102Right-handed alpha
Helix 2
2
A
139 148Right-handed alpha
Helix 3
3
A
154 174Right-handed alpha
Helix 4
4
A
183 185Right-handed 310
Helix 5
5
A
219 223Right-handed 310
Helix 6
6
A
224 229Right-handed alpha
Helix 7
7
A
236 253Right-handed alpha
Helix 8
8
A
261 274Right-handed alpha
Helix 9
9
A
277 285Right-handed alpha
Helix 10
10
A
286 289Right-handed 310
Helix 11
11
A
300 305Right-handed alpha
Helix 12
12
A
310 321Right-handed alpha
Helix 13
13
A
324 328Right-handed 310
Helix 14
14
A
330 336Right-handed alpha
Helix 15
15
A
337 345Right-handed 310
Helix 16
16
A
370 372Right-handed 310
Helix 17
17
A
373 378Right-handed alpha
Helix 18
18
A
379 383Right-handed 310
Helix 19
19
B
422 436Right-handed alpha
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There are 3 sheets in PDB entry 3ZDI. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
38 44first strand
Strand 2
A
52 64anti-parallel
Strand 3
A
69 75anti-parallel
Strand 4
A
81 89anti-parallel
Strand 5
A
126 133anti-parallel
Strand 6
A
112 119anti-parallel
Strand 7
A
38 44anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
137 138first strand
Strand 2
A
187 190anti-parallel
Strand 3
A
195 198anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
177 178first strand
Strand 2
A
205 206anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il