Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZYJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3ZYJ entry

There are 4 chains in PDB entry 3ZYJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 45	THR 444
B	TYR 30	SER 369
C	GLN 45	THR 444
D	TYR 30	GLN 208

There are 23 helices in PDB entry 3ZYJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	117	121	Right-handed 310
Helix 2	2	A	309	318	Right-handed alpha
Helix 3	3	B	58	60	Right-handed 310
Helix 4	4	B	67	70	Right-handed 310
Helix 5	5	B	102	108	Right-handed 310
Helix 6	6	B	191	196	Right-handed alpha
Helix 7	7	B	202	206	Right-handed 310
Helix 8	8	B	235	244	Right-handed alpha
Helix 9	9	B	249	260	Right-handed alpha
Helix 10	10	B	260	267	Right-handed alpha
Helix 11	11	B	290	294	Right-handed 310
Helix 12	12	C	117	121	Right-handed 310
Helix 13	13	C	309	318	Right-handed alpha
Helix 14	14	C	417	421	Right-handed 310
Helix 15	15	D	57	61	Right-handed 310
Helix 16	16	D	67	70	Right-handed 310
Helix 17	17	D	102	107	Right-handed 310
Helix 18	18	D	191	196	Right-handed alpha
Helix 19	19	D	202	206	Right-handed 310
Helix 20	20	D	235	244	Right-handed alpha
Helix 21	21	D	249	260	Right-handed alpha
Helix 22	22	D	260	267	Right-handed alpha
Helix 23	23	D	290	294	Right-handed 310

There are 30 sheets in PDB entry 3ZYJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, BA, BB, BC, BD, BE, BF, BG, CA, CB, CC, CD, CE, CF, CG, CH, A, DB, C, DD, DE, DF, G,

There are 12 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	59	61	anti-parallel
Strand 3	A	80	82	parallel
Strand 4	A	104	106	parallel
Strand 5	A	128	130	parallel
Strand 6	A	152	154	parallel
Strand 7	A	176	178	parallel
Strand 8	A	201	203	parallel
Strand 9	A	223	225	parallel
Strand 10	A	247	249	parallel
Strand 11	A	271	273	parallel
Strand 12	A	295	297	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	91	first strand
Strand 2	A	114	115	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	163	first strand
Strand 2	A	187	188	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	234	first strand
Strand 2	A	257	258	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	304	first strand
Strand 2	A	330	332	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	358	first strand
Strand 2	A	376	377	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	366	first strand
Strand 2	A	434	444	parallel
Strand 3	A	422	429	anti-parallel
Strand 4	A	383	387	anti-parallel
Strand 5	A	393	395	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	373	first strand
Strand 2	A	411	413	anti-parallel
Strand 3	A	403	405	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	36	first strand
Strand 2	B	45	47	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	56	first strand
Strand 2	B	304	307	anti-parallel
Strand 3	B	142	154	parallel
Strand 4	B	268	278	anti-parallel
Strand 5	B	169	175	anti-parallel
Strand 6	B	183	189	anti-parallel
Strand 7	B	216	217	parallel

Back to list of sheets
Back to top of page

There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	56	first strand
Strand 2	B	304	307	anti-parallel
Strand 3	B	142	154	parallel
Strand 4	B	62	66	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	78	first strand
Strand 2	B	91	92	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	129	first strand
Strand 2	B	297	302	anti-parallel
Strand 3	B	158	162	anti-parallel
Strand 4	B	230	233	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	319	first strand
Strand 2	B	322	325	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	332	first strand
Strand 2	B	338	339	anti-parallel

Back to list of sheets
Back to top of page

There are 12 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	59	61	anti-parallel
Strand 3	C	80	82	parallel
Strand 4	C	104	106	parallel
Strand 5	C	128	130	parallel
Strand 6	C	152	154	parallel
Strand 7	C	176	178	parallel
Strand 8	C	201	203	parallel
Strand 9	C	223	225	parallel
Strand 10	C	247	249	parallel
Strand 11	C	271	273	parallel
Strand 12	C	295	297	parallel

Back to list of sheets
Back to top of page

There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	91	first strand
Strand 2	C	114	115	parallel

Back to list of sheets
Back to top of page

There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	163	first strand
Strand 2	C	187	188	parallel

Back to list of sheets
Back to top of page

There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	233	234	first strand
Strand 2	C	257	258	parallel

Back to list of sheets
Back to top of page

There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	303	304	first strand
Strand 2	C	330	332	parallel

Back to list of sheets
Back to top of page

There are 2 strands in CF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	356	358	first strand
Strand 2	C	376	377	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in CG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	363	365	first strand
Strand 2	C	434	443	parallel
Strand 3	C	422	429	anti-parallel
Strand 4	C	383	387	anti-parallel
Strand 5	C	393	394	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in CH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	372	373	first strand
Strand 2	C	411	413	anti-parallel
Strand 3	C	403	405	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	38	first strand
Strand 2	D	43	47	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	66	first strand
Strand 2	D	142	147	anti-parallel
Strand 3	D	271	278	anti-parallel
Strand 4	D	169	175	anti-parallel
Strand 5	D	183	189	anti-parallel
Strand 6	D	216	217	parallel

Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	78	first strand
Strand 2	D	91	92	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	129	first strand
Strand 2	D	297	302	anti-parallel
Strand 3	D	158	162	anti-parallel
Strand 4	D	230	233	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	268	269	first strand
Strand 2	D	152	154	anti-parallel
Strand 3	D	305	307	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in DF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	316	319	first strand
Strand 2	D	322	325	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	331	332	first strand
Strand 2	D	338	339	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3ZYJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZYJ