Analysis of interatomic Contacts of Structural Units in PDB entry:
4AGD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AGD entry

There is 1 chain in PDB entry 4AGD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 802GLN 1169
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4AGD. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
808 811Right-handed 310
Helix 2
2
A
823 828Right-handed alpha
Helix 3
3
A
875 893Right-handed alpha
Helix 4
4
A
923 930Right-handed alpha
Helix 5
5
A
1001 1022Right-handed alpha
Helix 6
6
A
1038 1040Right-handed 310
Helix 7
7
A
1047 1051Right-handed 310
Helix 8
8
A
1073 1079Right-handed alpha
Helix 9
9
A
1084 1099Right-handed alpha
Helix 10
10
A
1112 1121Right-handed alpha
Helix 11
11
A
1132 1143Right-handed alpha
Helix 12
12
A
1152 1167Right-handed alpha
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There are 4 sheets in PDB entry 4AGD. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
804 806first strand
Strand 2
A
1024 1026anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
834 842first strand
Strand 2
A
846 853anti-parallel
Strand 3
A
864 870anti-parallel
Strand 4
A
913 917anti-parallel
Strand 5
A
901 905anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1034 1036first strand
Strand 2
A
1042 1044anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1060 1062first strand
Strand 2
A
1065 1067anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il