Analysis of interatomic Contacts of Structural Units in PDB entry:
4AJ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AJ9 entry

There are 4 chains in PDB entry 4AJ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 38ASP 714
B
 ASP 38ASP 716
C
 ASP 38GLU 719
D
 ASP 38GLY 715
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are114 helices in PDB entry 4AJ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 45Right-handed 310
Helix 2
2
A
81 93Right-handed alpha
Helix 3
3
A
124 128Right-handed 310
Helix 4
4
A
184 186Right-handed 310
Helix 5
5
A
187 196Right-handed alpha
Helix 6
6
A
210 220Right-handed alpha
Helix 7
7
A
223 231Right-handed alpha
Helix 8
8
A
232 236Right-handed 310
Helix 9
9
A
239 243Right-handed 310
Helix 10
10
A
277 288Right-handed alpha
Helix 11
11
A
290 302Right-handed alpha
Helix 12
12
A
316 320Right-handed 310
Helix 13
13
A
355 360Right-handed alpha
Helix 14
14
A
379 398Right-handed alpha
Helix 15
15
A
401 405Right-handed 310
Helix 16
16
A
472 476Right-handed 310
Helix 17
17
A
479 488Right-handed alpha
Helix 18
18
A
490 506Right-handed alpha
Helix 19
19
A
510 525Right-handed alpha
Helix 20
20
A
525 537Right-handed alpha
Helix 21
21
A
544 548Right-handed 310
Helix 22
22
A
580 594Right-handed alpha
Helix 23
23
A
618 622Right-handed 310
Helix 24
24
A
630 636Right-handed 310
Helix 25
25
A
636 641Right-handed 310
Helix 26
26
A
648 660Right-handed alpha
Helix 27
27
A
670 677Right-handed alpha
Helix 28
28
A
690 705Right-handed alpha
Helix 29
29
A
707 711Right-handed 310
Helix 30
30
B
40 45Right-handed 310
Helix 31
31
B
81 93Right-handed alpha
Helix 32
32
B
124 128Right-handed 310
Helix 33
33
B
184 186Right-handed 310
Helix 34
34
B
187 196Right-handed alpha
Helix 35
35
B
210 220Right-handed alpha
Helix 36
36
B
223 231Right-handed alpha
Helix 37
37
B
232 236Right-handed 310
Helix 38
38
B
239 243Right-handed 310
Helix 39
39
B
277 288Right-handed alpha
Helix 40
40
B
290 302Right-handed alpha
Helix 41
41
B
316 320Right-handed 310
Helix 42
42
B
355 360Right-handed alpha
Helix 43
43
B
379 398Right-handed alpha
Helix 44
44
B
401 405Right-handed 310
Helix 45
45
B
472 476Right-handed 310
Helix 46
46
B
479 488Right-handed alpha
Helix 47
47
B
490 506Right-handed alpha
Helix 48
48
B
510 525Right-handed alpha
Helix 49
49
B
525 537Right-handed alpha
Helix 50
50
B
544 548Right-handed 310
Helix 51
51
B
580 595Right-handed alpha
Helix 52
52
B
618 622Right-handed 310
Helix 53
53
B
630 635Right-handed 310
Helix 54
54
B
648 660Right-handed alpha
Helix 55
55
B
670 677Right-handed alpha
Helix 56
56
B
690 705Right-handed alpha
Helix 57
57
B
707 711Right-handed 310
Helix 58
58
C
40 45Right-handed 310
Helix 59
59
C
81 93Right-handed alpha
Helix 60
60
C
124 128Right-handed 310
Helix 61
61
C
184 186Right-handed 310
Helix 62
62
C
187 196Right-handed alpha
Helix 63
63
C
210 220Right-handed alpha
Helix 64
64
C
223 231Right-handed alpha
Helix 65
65
C
232 236Right-handed 310
Helix 66
66
C
239 243Right-handed 310
Helix 67
67
C
277 288Right-handed alpha
Helix 68
68
C
290 302Right-handed alpha
Helix 69
69
C
316 320Right-handed 310
Helix 70
70
C
355 360Right-handed alpha
Helix 71
71
C
379 398Right-handed alpha
Helix 72
72
C
401 405Right-handed 310
Helix 73
73
C
472 476Right-handed 310
Helix 74
74
C
479 488Right-handed alpha
Helix 75
75
C
490 506Right-handed alpha
Helix 76
76
C
510 525Right-handed alpha
Helix 77
77
C
525 537Right-handed alpha
Helix 78
78
C
544 548Right-handed 310
Helix 79
79
C
580 595Right-handed alpha
Helix 80
80
C
618 622Right-handed 310
Helix 81
81
C
630 635Right-handed 310
Helix 82
82
C
637 641Right-handed 310
Helix 83
83
C
648 660Right-handed alpha
Helix 84
84
C
670 677Right-handed alpha
Helix 85
85
C
690 705Right-handed alpha
Helix 86
86
C
707 711Right-handed 310
Helix 87
87
D
40 45Right-handed 310
Helix 88
88
D
81 93Right-handed alpha
Helix 89
89
D
124 128Right-handed 310
Helix 90
90
D
184 186Right-handed 310
Helix 91
91
D
187 196Right-handed alpha
Helix 92
92
D
210 220Right-handed alpha
Helix 93
93
D
223 231Right-handed alpha
Helix 94
94
D
232 236Right-handed 310
Helix 95
95
D
239 243Right-handed 310
Helix 96
96
D
277 288Right-handed alpha
Helix 97
97
D
290 302Right-handed alpha
Helix 98
98
D
316 320Right-handed 310
Helix 99
99
D
355 360Right-handed alpha
Helix 100
100
D
379 398Right-handed alpha
Helix 101
101
D
401 405Right-handed 310
Helix 102
102
D
472 476Right-handed 310
Helix 103
103
D
479 488Right-handed alpha
Helix 104
104
D
490 506Right-handed alpha
Helix 105
105
D
510 525Right-handed alpha
Helix 106
106
D
525 537Right-handed alpha
Helix 107
107
D
580 595Right-handed alpha
Helix 108
108
D
618 622Right-handed 310
Helix 109
109
D
630 635Right-handed 310
Helix 110
110
D
637 642Right-handed 310
Helix 111
111
D
648 660Right-handed alpha
Helix 112
112
D
670 677Right-handed alpha
Helix 113
113
D
690 705Right-handed alpha
Helix 114
114
D
707 711Right-handed 310
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There are 14 sheets in PDB entry 4AJ9. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, AE, BB, BC, BD, BE, CA, CB, DA, DB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
D
427 428parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
B
462 468anti-parallel
Strand 3
D
462 468anti-parallel
Strand 4
C
70 71anti-parallel
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There are 11 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 114first strand
Strand 2
A
133 141anti-parallel
Strand 3
A
158 165anti-parallel
Strand 4
A
168 175anti-parallel
Strand 5
A
245 246anti-parallel
Strand 6
A
260 269anti-parallel
Strand 7
A
307 315anti-parallel
Strand 8
A
342 351anti-parallel
Strand 9
A
105 114anti-parallel
Strand 10
A
427 428first strand
Strand 11
D
47 48parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 71first strand
Strand 2
A
462 468anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
462 468anti-parallel
Strand 2
D
70 71anti-parallel
Strand 3
A
612 613first strand
Strand 4
A
598 603parallel
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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
570 574parallel
Strand 2
A
624 627parallel
Strand 3
A
664 667parallel
Strand 4
A
686 689parallel
Strand 5
B
47 48first strand
Strand 6
C
427 428parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 114first strand
Strand 2
B
133 141anti-parallel
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There are 11 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 165anti-parallel
Strand 2
B
168 175anti-parallel
Strand 3
B
245 246anti-parallel
Strand 4
B
260 269anti-parallel
Strand 5
B
307 315anti-parallel
Strand 6
B
342 351anti-parallel
Strand 7
B
105 114anti-parallel
Strand 8
B
427 428first strand
Strand 9
C
47 48parallel
Strand 10
B
612 613first strand
Strand 11
B
598 603parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
570 574parallel
Strand 2
B
624 627parallel
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There are 6 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
664 667parallel
Strand 2
B
686 689parallel
Strand 3
C
105 114first strand
Strand 4
C
133 141anti-parallel
Strand 5
C
158 165anti-parallel
Strand 6
C
168 175anti-parallel
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There are 11 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
245 246anti-parallel
Strand 2
C
260 269anti-parallel
Strand 3
C
307 315anti-parallel
Strand 4
C
342 351anti-parallel
Strand 5
C
105 114anti-parallel
Strand 6
C
612 613first strand
Strand 7
C
598 603parallel
Strand 8
C
570 574parallel
Strand 9
C
624 627parallel
Strand 10
C
664 667parallel
Strand 11
C
686 689parallel
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There are 6 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
105 114first strand
Strand 2
D
133 141anti-parallel
Strand 3
D
158 165anti-parallel
Strand 4
D
168 175anti-parallel
Strand 5
D
245 246anti-parallel
Strand 6
D
260 269anti-parallel
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There are 11 strands in DA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
307 315anti-parallel
Strand 2
D
342 351anti-parallel
Strand 3
D
105 114anti-parallel
Strand 4
D
612 613first strand
Strand 5
D
598 603parallel
Strand 6
D
570 574parallel
Strand 7
D
624 627parallel
Strand 8
D
664 667parallel
Strand 9
D
686 689parallel
Strand 10
C
0 0first strand
Strand 11
C
0 0first strand
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There are 6 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
0 0first strand
Strand 2
C
0 0first strand
Strand 3
C
0 0first strand
Strand 4
C
0 0first strand
Strand 5
C
0 0first strand
Strand 6
C
0 0first strand
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