Analysis of interatomic Contacts of Structural Units in PDB entry:
4AZW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AZW entry

There is 1 chain in PDB entry 4AZW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 5LYS 449
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 4AZW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 12Right-handed alpha
Helix 2
2
A
22 26Right-handed 310
Helix 3
3
A
33 52Right-handed alpha
Helix 4
4
A
65 73Right-handed alpha
Helix 5
5
A
84 98Right-handed alpha
Helix 6
6
A
109 116Right-handed alpha
Helix 7
7
A
130 139Right-handed alpha
Helix 8
8
A
139 153Right-handed alpha
Helix 9
9
A
170 174Right-handed 310
Helix 10
10
A
177 182Right-handed 310
Helix 11
11
A
258 262Right-handed 310
Helix 12
12
A
264 284Right-handed alpha
Helix 13
13
A
316 322Right-handed alpha
Helix 14
14
A
327 345Right-handed alpha
Helix 15
15
A
353 355Right-handed 310
Helix 16
16
A
369 371Right-handed 310
Helix 17
17
A
383 398Right-handed alpha
Helix 18
18
A
421 432Right-handed alpha
Helix 19
19
A
433 437Right-handed 310
Helix 20
20
A
438 448Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 4AZW. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 107first strand
Strand 2
A
77 82parallel
Strand 3
A
56 60parallel
Strand 4
A
124 128parallel
Strand 5
A
156 160parallel
Strand 6
A
204 209anti-parallel
Strand 7
A
187 193anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 215first strand
Strand 2
A
218 221anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 226first strand
Strand 2
A
241 245anti-parallel
Strand 3
A
249 255anti-parallel
Strand 4
A
303 309anti-parallel
Strand 5
A
294 299anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 315first strand
Strand 2
A
357 359anti-parallel
Strand 3
A
365 367anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 349first strand
Strand 2
A
373 374anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il