Analysis of interatomic Contacts of Structural Units in PDB entry:
4B8Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4B8Z entry

There are 4 chains in PDB entry 4B8Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 8ASN 315
B
 GLU -7ARG 320
C
 MET 8ARG 320
D
 MET 8ARG 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 4B8Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 29Right-handed alpha
Helix 2
2
A
50 61Right-handed alpha
Helix 3
3
A
75 80Right-handed alpha
Helix 4
4
A
82 105Right-handed alpha
Helix 5
5
A
114 118Right-handed 310
Helix 6
6
A
140 162Right-handed alpha
Helix 7
7
A
186 202Right-handed alpha
Helix 8
8
A
220 234Right-handed alpha
Helix 9
9
A
245 249Right-handed 310
Helix 10
10
A
252 263Right-handed alpha
Helix 11
11
A
286 293Right-handed alpha
Helix 12
12
A
300 315Right-handed alpha
Helix 13
13
B
17 29Right-handed alpha
Helix 14
14
B
50 61Right-handed alpha
Helix 15
15
B
75 82Right-handed alpha
Helix 16
16
B
82 105Right-handed alpha
Helix 17
17
B
114 118Right-handed 310
Helix 18
18
B
137 139Right-handed 310
Helix 19
19
B
140 162Right-handed alpha
Helix 20
20
B
186 202Right-handed alpha
Helix 21
21
B
220 234Right-handed alpha
Helix 22
22
B
245 249Right-handed 310
Helix 23
23
B
252 263Right-handed alpha
Helix 24
24
B
286 293Right-handed alpha
Helix 25
25
B
300 315Right-handed alpha
Helix 26
26
C
17 29Right-handed alpha
Helix 27
27
C
50 61Right-handed alpha
Helix 28
28
C
75 82Right-handed alpha
Helix 29
29
C
82 105Right-handed alpha
Helix 30
30
C
114 118Right-handed 310
Helix 31
31
C
140 162Right-handed alpha
Helix 32
32
C
186 202Right-handed alpha
Helix 33
33
C
220 234Right-handed alpha
Helix 34
34
C
245 249Right-handed 310
Helix 35
35
C
252 263Right-handed alpha
Helix 36
36
C
286 293Right-handed alpha
Helix 37
37
C
300 315Right-handed alpha
Helix 38
38
D
17 29Right-handed alpha
Helix 39
39
D
50 61Right-handed alpha
Helix 40
40
D
75 82Right-handed alpha
Helix 41
41
D
82 105Right-handed alpha
Helix 42
42
D
114 118Right-handed 310
Helix 43
43
D
140 162Right-handed alpha
Helix 44
44
D
186 202Right-handed alpha
Helix 45
45
D
220 234Right-handed alpha
Helix 46
46
D
245 249Right-handed 310
Helix 47
47
D
252 263Right-handed alpha
Helix 48
48
D
286 293Right-handed alpha
Helix 49
49
D
300 315Right-handed alpha
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There are 16 sheets in PDB entry 4B8Z. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C, DD,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
9 13parallel
Strand 3
A
65 68parallel
Strand 4
A
108 112parallel
Strand 5
A
164 170parallel
Strand 6
A
240 242parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
A
217 219parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 208first strand
Strand 2
A
269 272parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 215first strand
Strand 2
A
250 251anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 40first strand
Strand 2
B
8 13parallel
Strand 3
B
65 68parallel
Strand 4
B
108 112parallel
Strand 5
B
164 170parallel
Strand 6
B
240 242parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 174first strand
Strand 2
B
217 219parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 208first strand
Strand 2
B
269 272parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 215first strand
Strand 2
B
250 251anti-parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 41first strand
Strand 2
C
9 13parallel
Strand 3
C
65 68parallel
Strand 4
C
108 112parallel
Strand 5
C
164 170parallel
Strand 6
C
240 242parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
172 174first strand
Strand 2
C
217 219parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
205 208first strand
Strand 2
C
269 272parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
214 215first strand
Strand 2
C
250 251anti-parallel
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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
37 40first strand
Strand 2
D
9 13parallel
Strand 3
D
65 68parallel
Strand 4
D
108 112parallel
Strand 5
D
164 170parallel
Strand 6
D
240 242parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
172 174first strand
Strand 2
D
217 219parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
205 208first strand
Strand 2
D
269 272parallel
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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
214 215first strand
Strand 2
D
250 251anti-parallel
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