Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 4BD3 entry
There are 3 chains in PDB entry 4BD3
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
SER 38 | GLU 95 |
B
|
ALA 31 | VAL 35 |
B
|
LYS 37 | TYR 41 |
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There are no helices in PDB entry
4BD3
There are
3 sheets in PDB entry 4BD3. Click on sheet of
interest to get list of strands forming it:
AA,
AB,
BA,
There are 4
strands in AA sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 79 |
83 | first strand |
Strand 2 |
A
| 69 |
74 | anti-parallel |
Strand 3 |
A
| 55 |
64 | anti-parallel |
Strand 4 |
B
| 38 |
39 | parallel |
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There are 5
strands in AB sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 79 |
83 | first strand |
Strand 2 |
A
| 69 |
74 | anti-parallel |
Strand 3 |
A
| 55 |
64 | anti-parallel |
Strand 4 |
A
| 45 |
49 | anti-parallel |
Strand 5 |
A
| 87 |
89 | anti-parallel |
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There are 2
strands in BA sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
B
| 38 |
39 | first strand |
Strand 2 |
A
| 55 |
64 | parallel |
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Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il