Analysis of interatomic Contacts of Structural Units in PDB entry:
4BJ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BJ3 entry

There are 17 chains in PDB entry 4BJ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 143ALA 325
B
ILE 144PHE 323
C
GLY 2PRO 3
C
GLY 5PRO 6
C
GLY 8PHE 9
C
GLY 11PRO 15
C
GLY 17PRO 18
D
GLY 2PRO 3
D
GLY 5PRO 6
D
GLY 8PHE 9
D
GLY 11PRO 15
D
GLY 17PRO 18
E
GLY 2PRO 3
E
GLY 5PRO 6
E
GLY 8PHE 9
E
GLY 11PRO 15
E
GLY 17PRO 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 4BJ3. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
158 172Right-handed alpha
Helix 2
2
A
202 211Right-handed alpha
Helix 3
3
A
222 234Right-handed alpha
Helix 4
4
A
259 261Right-handed 310
Helix 5
5
A
262 273Right-handed alpha
Helix 6
6
A
289 302Right-handed alpha
Helix 7
7
A
308 310Right-handed 310
Helix 8
8
A
318 325Right-handed alpha
Helix 9
9
B
158 171Right-handed alpha
Helix 10
10
B
202 205Right-handed 310
Helix 11
11
B
206 211Right-handed alpha
Helix 12
12
B
222 234Right-handed alpha
Helix 13
13
B
259 261Right-handed 310
Helix 14
14
B
262 273Right-handed alpha
Helix 15
15
B
289 304Right-handed alpha
Helix 16
16
B
307 310Right-handed 310
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There are 2 sheets in PDB entry 4BJ3. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
191 195first strand
Strand 2
A
181 187anti-parallel
Strand 3
A
144 151parallel
Strand 4
A
246 253parallel
Strand 5
A
276 281parallel
Strand 6
A
312 314parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
192 195first strand
Strand 2
B
181 187anti-parallel
Strand 3
B
145 151parallel
Strand 4
B
247 253parallel
Strand 5
B
276 281parallel
Strand 6
B
312 314parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il