Analysis of interatomic Contacts of Structural Units in PDB entry:
4BJJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BJJ entry

There are 2 chains in PDB entry 4BJJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3SER 108
B
 SER 7PRO 100
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 4BJJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 29Right-handed alpha
Helix 2
2
A
32 46Right-handed alpha
Helix 3
3
A
47 50Right-handed 310
Helix 4
4
A
102 106Right-handed 310
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There are 4 sheets in PDB entry 4BJJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
B
34 38anti-parallel
Strand 3
B
46 49anti-parallel
Strand 4
B
52 59anti-parallel
Strand 5
B
87 93anti-parallel
Strand 6
B
15 22parallel
Strand 7
A
76 81anti-parallel
Strand 8
A
86 98anti-parallel
Strand 9
A
69 71anti-parallel
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There are 11 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
B
34 38anti-parallel
Strand 3
B
46 49anti-parallel
Strand 4
B
52 59anti-parallel
Strand 5
B
87 93anti-parallel
Strand 6
B
15 22parallel
Strand 7
A
76 81anti-parallel
Strand 8
A
86 98anti-parallel
Strand 9
A
10 16parallel
Strand 10
B
64 69anti-parallel
Strand 11
B
81 83parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 71first strand
Strand 2
A
86 98anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
66 67anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il