Analysis of interatomic Contacts of Structural Units in PDB entry:
4BY7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BY7 entry

There is 1 chain in PDB entry 4BY7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 2GLY 1296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are148 helices in PDB entry 4BY7. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
23 31Right-handed alpha
Helix 2
2
A
95 104Right-handed alpha
Helix 3
3
A
119 127Right-handed alpha
Helix 4
4
A
130 143Right-handed alpha
Helix 5
5
A
203 213Right-handed alpha
Helix 6
6
A
215 222Right-handed alpha
Helix 7
7
A
230 233Right-handed 310
Helix 8
8
A
243 247Right-handed 310
Helix 9
9
A
260 282Right-handed alpha
Helix 10
10
A
288 305Right-handed alpha
Helix 11
11
A
324 330Right-handed alpha
Helix 12
12
A
334 340Right-handed alpha
Helix 13
13
A
368 374Right-handed alpha
Helix 14
14
A
384 395Right-handed alpha
Helix 15
15
A
451 453Right-handed 310
Helix 16
16
A
474 479Right-handed alpha
Helix 17
17
A
494 505Right-handed alpha
Helix 18
18
A
507 510Right-handed 310
Helix 19
19
A
524 535Right-handed alpha
Helix 20
20
A
543 553Right-handed alpha
Helix 21
21
A
574 579Right-handed alpha
Helix 22
22
A
618 623Right-handed alpha
Helix 23
23
A
628 638Right-handed alpha
Helix 24
24
A
638 661Right-handed alpha
Helix 25
25
A
665 670Right-handed 310
Helix 26
26
A
672 699Right-handed alpha
Helix 27
27
A
709 737Right-handed alpha
Helix 28
28
A
741 750Right-handed alpha
Helix 29
29
A
754 763Right-handed alpha
Helix 30
30
A
809 830Right-handed alpha
Helix 31
31
A
831 846Right-handed alpha
Helix 32
32
A
867 871Right-handed 310
Helix 33
33
A
874 876Right-handed 310
Helix 34
34
A
889 898Right-handed alpha
Helix 35
35
A
914 917Right-handed 310
Helix 36
36
A
922 947Right-handed alpha
Helix 37
37
A
959 972Right-handed alpha
Helix 38
38
A
982 995Right-handed alpha
Helix 39
39
A
1004 1015Right-handed alpha
Helix 40
40
A
1015 1026Right-handed alpha
Helix 41
41
A
1027 1034Right-handed alpha
Helix 42
42
A
1038 1057Right-handed alpha
Helix 43
43
A
1063 1078Right-handed alpha
Helix 44
44
A
1096 1106Right-handed alpha
Helix 45
45
A
1127 1139Right-handed alpha
Helix 46
46
A
1166 1173Right-handed alpha
Helix 47
47
A
1198 1205Right-handed alpha
Helix 48
48
A
1208 1218Right-handed alpha
Helix 49
49
A
1257 1270Right-handed alpha
Helix 50
50
A
1312 1318Right-handed alpha
Helix 51
51
A
1331 1340Right-handed alpha
Helix 52
52
A
1340 1359Right-handed alpha
Helix 53
53
A
1364 1377Right-handed alpha
Helix 54
54
A
1388 1392Right-handed 310
Helix 55
55
A
1395 1401Right-handed alpha
Helix 56
56
A
1404 1415Right-handed alpha
Helix 57
57
A
1423 1431Right-handed alpha
Helix 58
58
A
1436 1440Right-handed 310
Helix 59
59
A
1446 1451Right-handed alpha
Helix 60
60
B
29 42Right-handed alpha
Helix 61
61
B
44 57Right-handed alpha
Helix 62
62
B
57 63Right-handed alpha
Helix 63
63
B
113 120Right-handed alpha
Helix 64
64
B
179 183Right-handed 310
Helix 65
65
B
185 192Right-handed alpha
Helix 66
66
B
282 289Right-handed alpha
Helix 67
67
B
296 302Right-handed alpha
Helix 68
68
B
307 313Right-handed alpha
Helix 69
69
B
314 322Right-handed alpha
Helix 70
70
B
326 337Right-handed alpha
Helix 71
71
B
344 359Right-handed alpha
Helix 72
72
B
371 390Right-handed alpha
Helix 73
73
B
400 402Right-handed 310
Helix 74
74
B
408 435Right-handed alpha
Helix 75
75
B
450 464Right-handed alpha
Helix 76
76
B
487 495Right-handed alpha
Helix 77
77
B
515 519Right-handed 310
Helix 78
78
B
551 561Right-handed alpha
Helix 79
79
B
592 607Right-handed alpha
Helix 80
80
B
654 667Right-handed alpha
Helix 81
81
B
680 687Right-handed alpha
Helix 82
82
B
695 699Right-handed alpha
Helix 83
83
B
744 749Right-handed 310
Helix 84
84
B
752 756Right-handed 310
Helix 85
85
B
758 762Right-handed 310
Helix 86
86
B
763 774Right-handed alpha
Helix 87
87
B
808 813Right-handed alpha
Helix 88
88
B
843 848Right-handed alpha
Helix 89
89
B
1013 1017Right-handed 310
Helix 90
90
B
1022 1039Right-handed alpha
Helix 91
91
B
1051 1061Right-handed alpha
Helix 92
92
B
1098 1102Right-handed 310
Helix 93
93
B
1121 1125Right-handed 310
Helix 94
94
B
1131 1142Right-handed alpha
Helix 95
95
B
1143 1152Right-handed alpha
Helix 96
96
B
1198 1210Right-handed alpha
Helix 97
97
C
26 40Right-handed alpha
Helix 98
98
C
59 69Right-handed alpha
Helix 99
99
C
76 80Right-handed 310
Helix 100
100
C
116 118Right-handed 310
Helix 101
101
C
167 171Right-handed 310
Helix 102
102
C
196 201Right-handed alpha
Helix 103
103
C
204 210Right-handed 310
Helix 104
104
C
239 267Right-handed alpha
Helix 105
105
D
53 74Right-handed alpha
Helix 106
106
D
121 134Right-handed alpha
Helix 107
107
D
138 152Right-handed alpha
Helix 108
108
D
156 168Right-handed alpha
Helix 109
109
D
173 183Right-handed alpha
Helix 110
110
D
187 195Right-handed alpha
Helix 111
111
D
196 201Right-handed 310
Helix 112
112
D
203 218Right-handed alpha
Helix 113
113
E
1 26Right-handed alpha
Helix 114
114
E
31 36Right-handed alpha
Helix 115
115
E
38 47Right-handed alpha
Helix 116
116
E
54 59Right-handed alpha
Helix 117
117
E
65 72Right-handed alpha
Helix 118
118
E
89 103Right-handed alpha
Helix 119
119
E
119 127Right-handed 310
Helix 120
120
E
137 141Right-handed alpha
Helix 121
121
E
143 147Right-handed 310
Helix 122
122
E
157 168Right-handed alpha
Helix 123
123
E
171 175Right-handed 310
Helix 124
124
E
182 188Right-handed alpha
Helix 125
125
F
75 79Right-handed 310
Helix 126
126
F
86 103Right-handed alpha
Helix 127
127
F
116 127Right-handed alpha
Helix 128
128
G
14 18Right-handed 310
Helix 129
129
G
21 35Right-handed alpha
Helix 130
130
G
50 54Right-handed 310
Helix 131
131
G
113 115Right-handed 310
Helix 132
132
H
129 133Right-handed 310
Helix 133
133
I
59 65Right-handed 310
Helix 134
134
J
17 27Right-handed alpha
Helix 135
135
J
31 39Right-handed alpha
Helix 136
136
J
43 52Right-handed alpha
Helix 137
137
J
56 61Right-handed alpha
Helix 138
138
K
5 10Right-handed 310
Helix 139
139
K
39 51Right-handed alpha
Helix 140
140
K
82 110Right-handed alpha
Helix 141
141
X
233 252Right-handed alpha
Helix 142
142
X
253 259Right-handed alpha
Helix 143
143
X
271 284Right-handed alpha
Helix 144
144
X
284 290Right-handed alpha
Helix 145
145
X
301 315Right-handed alpha
Helix 146
146
X
319 328Right-handed alpha
Helix 147
147
X
331 337Right-handed alpha
Helix 148
148
X
345 360Right-handed alpha
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There are 49 sheets in PDB entry 4BY7. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, A, DB, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM, BN, BO, BP, BQ, CA, CB, CC, CD, C, EA, EB, EC, GA, GB, HA, IA, IB, KA,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1418 1419first strand
Strand 2
A
16 18anti-parallel
Strand 3
B
1215 1217anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
82 91first strand
Strand 2
A
235 241anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
151 153first strand
Strand 2
A
161 163anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
175 177first strand
Strand 2
A
180 185anti-parallel
Strand 3
A
198 202anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
343 345first strand
Strand 2
B
1128 1130anti-parallel
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There are 8 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
348 355first strand
Strand 2
B
1104 1106anti-parallel
Strand 3
A
363 367first strand
Strand 4
A
455 463parallel
Strand 5
A
441 445anti-parallel
Strand 6
A
468 470anti-parallel
Strand 7
A
486 490anti-parallel
Strand 8
A
348 355anti-parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
375 379first strand
Strand 2
A
431 435anti-parallel
Strand 3
A
402 406anti-parallel
Strand 4
A
412 414anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
512 513first strand
Strand 2
A
518 519anti-parallel
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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
540 542first strand
Strand 2
A
571 573anti-parallel
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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
588 589first strand
Strand 2
A
606 607anti-parallel
Strand 3
A
612 614anti-parallel
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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
766 767first strand
Strand 2
A
799 800anti-parallel
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There are 3 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
849 850first strand
Strand 2
A
856 857anti-parallel
Strand 3
A
863 865anti-parallel
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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
878 882first strand
Strand 2
A
953 957anti-parallel
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There are 4 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1280 1292first strand
Strand 2
A
1298 1309anti-parallel
Strand 3
A
1115 1119anti-parallel
Strand 4
A
1328 1329anti-parallel
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There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1141 1142first strand
Strand 2
A
1272 1274anti-parallel
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There are 5 strands in AP sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1224 1228first strand
Strand 2
A
1236 1242anti-parallel
Strand 3
A
1191 1197anti-parallel
Strand 4
A
1147 1154anti-parallel
Strand 5
I
42 45anti-parallel
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There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
48 49first strand
Strand 2
G
3 13anti-parallel
Strand 3
G
68 79anti-parallel
Strand 4
G
59 61anti-parallel
Strand 5
A
1442 1445anti-parallel
Strand 6
F
132 137anti-parallel
Strand 7
F
143 147anti-parallel
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There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
48 49first strand
Strand 2
G
3 13anti-parallel
Strand 3
G
68 79anti-parallel
Strand 4
G
43 48anti-parallel
Strand 5
G
38 39anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
92 97first strand
Strand 2
B
125 132anti-parallel
Strand 3
B
165 171anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
101 102first strand
Strand 2
B
110 111anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
203 205first strand
Strand 2
B
208 212anti-parallel
Strand 3
B
480 482anti-parallel
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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
404 407first strand
Strand 2
B
214 218anti-parallel
Strand 3
B
497 499parallel
Strand 4
B
536 538anti-parallel
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There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
223 227first strand
Strand 2
B
234 242anti-parallel
Strand 3
B
252 259anti-parallel
Strand 4
B
269 272anti-parallel
Strand 5
B
280 281anti-parallel
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
544 545first strand
Strand 2
B
633 641anti-parallel
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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
650 651first strand
Strand 2
B
633 641parallel
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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
690 694first strand
Strand 2
B
633 641anti-parallel
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There are 4 strands in BI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
703 704first strand
Strand 2
B
740 741parallel
Strand 3
B
633 641anti-parallel
Strand 4
B
650 651parallel
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There are 4 strands in BJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
703 704first strand
Strand 2
B
740 741parallel
Strand 3
B
633 641anti-parallel
Strand 4
B
690 694anti-parallel
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There are 5 strands in BK sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
564 565first strand
Strand 2
B
586 590anti-parallel
Strand 3
B
578 582anti-parallel
Strand 4
B
623 627parallel
Strand 5
B
614 618anti-parallel
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There are 5 strands in BL sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
793 796first strand
Strand 2
B
853 862anti-parallel
Strand 3
B
962 972anti-parallel
Strand 4
B
947 956anti-parallel
Strand 5
B
904 905anti-parallel
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There are 2 strands in BM sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
804 805first strand
Strand 2
B
1042 1043parallel
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There are 8 strands in BN sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
821 827first strand
Strand 2
B
1080 1094anti-parallel
Strand 3
B
838 842first strand
Strand 4
B
987 994parallel
Strand 5
B
979 982anti-parallel
Strand 6
B
1010 1012anti-parallel
Strand 7
B
1069 1073first strand
Strand 8
B
821 827anti-parallel
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There are 2 strands in BO sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
873 874first strand
Strand 2
B
914 915anti-parallel
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There are 2 strands in BP sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
910 912first strand
Strand 2
B
939 940anti-parallel
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There are 2 strands in BQ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1157 1163first strand
Strand 2
B
1191 1197anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
8 13first strand
Strand 2
C
17 22anti-parallel
Strand 3
C
228 233anti-parallel
Strand 4
C
177 180anti-parallel
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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
119 120first strand
Strand 2
C
96 104anti-parallel
Strand 3
C
152 162anti-parallel
Strand 4
C
43 54anti-parallel
Strand 5
L
65 67anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
72 74first strand
Strand 2
C
129 132anti-parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
111 114first strand
Strand 2
C
143 147anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
36 38first strand
Strand 2
D
44 46anti-parallel
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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
60 62first strand
Strand 2
E
78 82anti-parallel
Strand 3
E
107 112parallel
Strand 4
E
131 136parallel
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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
87 88first strand
Strand 2
E
115 116parallel
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There are 4 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
152 155first strand
Strand 2
E
195 200anti-parallel
Strand 3
E
208 215anti-parallel
Strand 4
E
177 179parallel
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There are 7 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
86 95first strand
Strand 2
G
142 151anti-parallel
Strand 3
G
98 103first strand
Strand 4
G
106 111first strand
Strand 5
G
158 162first strand
Strand 6
G
169 170first strand
Strand 7
G
142 151anti-parallel
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There are 3 strands in GB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
120 122first strand
Strand 2
G
129 131anti-parallel
Strand 3
G
136 137anti-parallel
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There are 9 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
7 16first strand
Strand 2
H
54 58anti-parallel
Strand 3
H
23 30first strand
Strand 4
H
37 43first strand
Strand 5
H
95 106first strand
Strand 6
H
140 145anti-parallel
Strand 7
H
112 118first strand
Strand 8
H
121 126first strand
Strand 9
H
54 58anti-parallel
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There are 3 strands in IA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
14 19first strand
Strand 2
I
24 29anti-parallel
Strand 3
I
35 37anti-parallel
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There are 4 strands in IB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
70 71first strand
Strand 2
I
83 87anti-parallel
Strand 3
I
99 103anti-parallel
Strand 4
I
109 111anti-parallel
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There are 4 strands in KA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
19 23first strand
Strand 2
K
30 36anti-parallel
Strand 3
K
70 77anti-parallel
Strand 4
K
56 62anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il