Analysis of interatomic Contacts of Structural Units in PDB entry:
4CFE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4CFE entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 9 chains in PDB entry 4CFE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 8ARG 171
A
 SER 173ALA 551
B
 ARG 78ARG 107
B
 HIS 109ILE 270
C
 ARG 10ARG 171
C
 SER 173ALA 551
D
 ARG 78ARG 107
D
 HIS 109ILE 270
E
 SER 27GLU 108
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 4CFE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 55Right-handed alpha
Helix 2
2
A
57 69Right-handed alpha
Helix 3
3
A
101 108Right-handed alpha
Helix 4
4
A
112 133Right-handed alpha
Helix 5
5
A
181 186Right-handed alpha
Helix 6
6
A
192 210Right-handed alpha
Helix 7
7
A
218 229Right-handed alpha
Helix 8
8
A
238 249Right-handed alpha
Helix 9
9
A
258 265Right-handed alpha
Helix 10
10
A
265 270Right-handed alpha
Helix 11
11
A
290 295Right-handed alpha
Helix 12
12
A
321 336Right-handed alpha
Helix 13
13
A
337 342Right-handed alpha
Helix 14
14
A
411 425Right-handed alpha
Helix 15
15
A
534 549Right-handed alpha
Helix 16
16
B
156 160Right-handed 310
Helix 17
17
B
161 172Right-handed alpha
Helix 18
18
B
207 212Right-handed 310
Helix 19
19
B
213 217Right-handed 310
Helix 20
20
C
49 55Right-handed alpha
Helix 21
21
C
57 69Right-handed alpha
Helix 22
22
C
101 108Right-handed alpha
Helix 23
23
C
112 133Right-handed alpha
Helix 24
24
C
181 187Right-handed alpha
Helix 25
25
C
192 210Right-handed alpha
Helix 26
26
C
218 229Right-handed alpha
Helix 27
27
C
238 249Right-handed alpha
Helix 28
28
C
258 264Right-handed alpha
Helix 29
29
C
265 270Right-handed alpha
Helix 30
30
C
327 336Right-handed alpha
Helix 31
31
C
337 342Right-handed alpha
Helix 32
32
C
411 425Right-handed alpha
Helix 33
33
C
534 549Right-handed alpha
Helix 34
34
D
156 160Right-handed 310
Helix 35
35
D
161 170Right-handed alpha
Helix 36
36
D
207 212Right-handed 310
Helix 37
37
D
213 217Right-handed 310
Helix 38
38
E
27 34Right-handed alpha
Helix 39
39
E
38 42Right-handed 310
Helix 40
40
E
56 67Right-handed alpha
Helix 41
41
E
87 98Right-handed alpha
Helix 42
42
E
106 112Right-handed alpha
Helix 43
43
E
113 121Right-handed alpha
Helix 44
44
E
137 148Right-handed alpha
Helix 45
45
E
169 178Right-handed alpha
Helix 46
46
E
192 197Right-handed alpha
Helix 47
47
E
212 224Right-handed alpha
Helix 48
48
E
246 252Right-handed alpha
Helix 49
49
E
261 266Right-handed alpha
Helix 50
50
E
267 270Right-handed 310
Helix 51
51
E
284 296Right-handed alpha
Helix 52
52
E
315 322Right-handed alpha
Helix 53
53
F
27 36Right-handed alpha
Helix 54
54
F
38 41Right-handed 310
Helix 55
55
F
56 67Right-handed alpha
Helix 56
56
F
87 98Right-handed alpha
Helix 57
57
F
106 112Right-handed alpha
Helix 58
58
F
113 121Right-handed alpha
Helix 59
59
F
137 148Right-handed alpha
Helix 60
60
F
169 178Right-handed alpha
Helix 61
61
F
186 191Right-handed 310
Helix 62
62
F
192 197Right-handed alpha
Helix 63
63
F
212 224Right-handed alpha
Helix 64
64
F
244 246Right-handed 310
Helix 65
65
F
247 252Right-handed alpha
Helix 66
66
F
261 266Right-handed alpha
Helix 67
67
F
267 270Right-handed 310
Helix 68
68
F
284 296Right-handed alpha
Helix 69
69
F
315 322Right-handed alpha
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There are 24 sheets in PDB entry 4CFE. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, CA, CB, CC, CD, CE, A, DB, C, DD, EA, EB, EC, FA, FB, FC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 24first strand
Strand 2
A
29 35anti-parallel
Strand 3
A
41 48anti-parallel
Strand 4
A
88 93anti-parallel
Strand 5
A
79 84anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
145 147anti-parallel
Strand 3
A
153 155anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
A
162 163anti-parallel
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There are 7 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 404first strand
Strand 2
B
239 241anti-parallel
Strand 3
B
248 257anti-parallel
Strand 4
B
260 269anti-parallel
Strand 5
E
45 52parallel
Strand 6
E
72 76parallel
Strand 7
E
81 86anti-parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 408first strand
Strand 2
A
464 471anti-parallel
Strand 3
A
450 460anti-parallel
Strand 4
A
437 443anti-parallel
Strand 5
A
429 434anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 84first strand
Strand 2
B
112 117anti-parallel
Strand 3
B
106 107anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 104first strand
Strand 2
B
91 95anti-parallel
Strand 3
B
121 129anti-parallel
Strand 4
B
132 134anti-parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 104first strand
Strand 2
B
91 95anti-parallel
Strand 3
B
121 129anti-parallel
Strand 4
B
149 155anti-parallel
Strand 5
B
141 143parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 134first strand
Strand 2
B
121 129anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 24first strand
Strand 2
C
29 35anti-parallel
Strand 3
C
41 48anti-parallel
Strand 4
C
88 94anti-parallel
Strand 5
C
79 84anti-parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
99 100first strand
Strand 2
C
145 147anti-parallel
Strand 3
C
153 155anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
135 136first strand
Strand 2
C
162 163anti-parallel
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There are 7 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
403 404first strand
Strand 2
D
239 241anti-parallel
Strand 3
D
248 257anti-parallel
Strand 4
D
260 269anti-parallel
Strand 5
F
45 52parallel
Strand 6
F
72 76parallel
Strand 7
F
81 86anti-parallel
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There are 5 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
406 408first strand
Strand 2
C
464 471anti-parallel
Strand 3
C
450 460anti-parallel
Strand 4
C
437 443anti-parallel
Strand 5
C
429 434anti-parallel
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There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
79 84first strand
Strand 2
D
112 117anti-parallel
Strand 3
D
106 107anti-parallel
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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
103 104first strand
Strand 2
D
91 95anti-parallel
Strand 3
D
121 129anti-parallel
Strand 4
D
132 134anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
103 104first strand
Strand 2
D
91 95anti-parallel
Strand 3
D
121 129anti-parallel
Strand 4
D
149 155anti-parallel
Strand 5
D
141 143parallel
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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
132 134first strand
Strand 2
D
121 129anti-parallel
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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
152 156first strand
Strand 2
E
163 168anti-parallel
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There are 3 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
207 208first strand
Strand 2
E
227 231parallel
Strand 3
E
237 242anti-parallel
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There are 3 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
278 280first strand
Strand 2
E
299 303parallel
Strand 3
E
309 314anti-parallel
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There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
152 156first strand
Strand 2
F
163 168anti-parallel
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There are 3 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
207 208first strand
Strand 2
F
227 231parallel
Strand 3
F
237 242anti-parallel
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There are 3 strands in FC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
278 279first strand
Strand 2
F
299 303parallel
Strand 3
F
309 314anti-parallel
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