Analysis of interatomic Contacts of Structural Units in PDB entry:
4CMM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4CMM entry

There are 2 chains in PDB entry 4CMM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 3SER 119
B
LEU 2THR 120
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 4CMM. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
82 86Right-handed 310
Helix 2
2
B
32 34Right-handed 310
Helix 3
3
B
53 55Right-handed 310
Helix 4
4
B
60 64Right-handed 310
Helix 5
5
B
69 76Right-handed 310
Helix 6
6
B
84 90Right-handed alpha
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There are 7 sheets in PDB entry 4CMM. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
6 7first strand
Strand 2
A
26 27anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
12 16first strand
Strand 2
A
110 115parallel
Strand 3
A
87 95anti-parallel
Strand 4
A
102 106parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
12 16first strand
Strand 2
A
110 115parallel
Strand 3
A
87 95anti-parallel
Strand 4
A
36 40anti-parallel
Strand 5
A
47 50anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
102 106first strand
Strand 2
A
87 95parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
21 23first strand
Strand 2
A
76 78anti-parallel
Strand 3
A
60 62anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
9 12first strand
Strand 2
B
103 113parallel
Strand 3
B
92 100anti-parallel
Strand 4
B
36 42anti-parallel
Strand 5
B
45 51anti-parallel
Strand 6
B
56 58anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
18 21first strand
Strand 2
B
80 83anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il