Analysis of interatomic Contacts of Structural Units in PDB entry:
4CMW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4CMW entry

There are 2 chains in PDB entry 4CMW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2GLY 296
B
 LEU 3GLY 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 4CMW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 12Right-handed alpha
Helix 2
2
A
13 25Right-handed alpha
Helix 3
3
A
35 44Right-handed alpha
Helix 4
4
A
50 69Right-handed alpha
Helix 5
5
A
95 104Right-handed alpha
Helix 6
6
A
104 114Right-handed alpha
Helix 7
7
A
123 128Right-handed alpha
Helix 8
8
A
131 148Right-handed alpha
Helix 9
9
A
165 181Right-handed alpha
Helix 10
10
A
185 195Right-handed alpha
Helix 11
11
A
231 235Right-handed 310
Helix 12
12
A
236 250Right-handed alpha
Helix 13
13
A
258 262Right-handed 310
Helix 14
14
A
263 277Right-handed alpha
Helix 15
15
B
5 12Right-handed alpha
Helix 16
16
B
13 25Right-handed alpha
Helix 17
17
B
35 44Right-handed alpha
Helix 18
18
B
50 69Right-handed alpha
Helix 19
19
B
90 104Right-handed alpha
Helix 20
20
B
104 114Right-handed alpha
Helix 21
21
B
123 128Right-handed alpha
Helix 22
22
B
131 148Right-handed alpha
Helix 23
23
B
165 181Right-handed alpha
Helix 24
24
B
185 195Right-handed alpha
Helix 25
25
B
231 235Right-handed 310
Helix 26
26
B
236 250Right-handed alpha
Helix 27
27
B
258 262Right-handed 310
Helix 28
28
B
263 276Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4CMW. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 121first strand
Strand 2
A
154 160parallel
Strand 3
A
73 79parallel
Strand 4
A
28 30parallel
Strand 5
A
203 207parallel
Strand 6
A
224 228parallel
Strand 7
B
281 282anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 282first strand
Strand 2
B
224 228anti-parallel
Strand 3
B
203 207parallel
Strand 4
B
28 30parallel
Strand 5
B
73 79parallel
Strand 6
B
154 160parallel
Strand 7
B
116 121parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 288first strand
Strand 2
A
291 294anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
285 288first strand
Strand 2
B
291 294anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il