Analysis of interatomic Contacts of Structural Units in PDB entry:
4D0N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D0N entry

There are 2 chains in PDB entry 4D0N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 3ALA 181
B
SER 1970ASN 2340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 4D0N. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
17 27Right-handed alpha
Helix 2
2
A
69 74Right-handed 310
Helix 3
3
A
88 107Right-handed alpha
Helix 4
4
A
118 122Right-handed 310
Helix 5
5
A
124 133Right-handed alpha
Helix 6
6
A
140 152Right-handed alpha
Helix 7
7
A
166 180Right-handed alpha
Helix 8
8
B
1970 1975Right-handed alpha
Helix 9
9
B
1979 1984Right-handed alpha
Helix 10
10
B
1985 1991Right-handed alpha
Helix 11
11
B
1993 2023Right-handed alpha
Helix 12
12
B
2023 2032Right-handed alpha
Helix 13
13
B
2035 2043Right-handed alpha
Helix 14
14
B
2045 2066Right-handed alpha
Helix 15
15
B
2081 2089Right-handed alpha
Helix 16
16
B
2090 2136Right-handed alpha
Helix 17
17
B
2138 2141Right-handed 310
Helix 18
18
B
2142 2154Right-handed alpha
Helix 19
19
B
2156 2168Right-handed alpha
Helix 20
20
B
2171 2212Right-handed alpha
Helix 21
21
B
2229 2231Right-handed 310
Helix 22
22
B
2321 2340Right-handed alpha
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There are 6 sheets in PDB entry 4D0N. Click on sheet of interest to get list of strands forming it: AA, BA, BB, BC, BD, BE,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
42 48first strand
Strand 2
A
51 59anti-parallel
Strand 3
A
5 12parallel
Strand 4
A
79 85parallel
Strand 5
A
112 117parallel
Strand 6
A
155 158parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2217 2219first strand
Strand 2
B
2225 2227anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2272 2275first strand
Strand 2
B
2262 2269parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2284 2286first strand
Strand 2
B
2262 2269anti-parallel
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There are 7 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2290 2294first strand
Strand 2
B
2301 2306anti-parallel
Strand 3
B
2314 2318anti-parallel
Strand 4
B
2236 2245anti-parallel
Strand 5
B
2251 2259anti-parallel
Strand 6
B
2262 2269anti-parallel
Strand 7
B
2272 2275parallel
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There are 7 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2290 2294first strand
Strand 2
B
2301 2306anti-parallel
Strand 3
B
2314 2318anti-parallel
Strand 4
B
2236 2245anti-parallel
Strand 5
B
2251 2259anti-parallel
Strand 6
B
2262 2269anti-parallel
Strand 7
B
2284 2286anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il