Analysis of interatomic Contacts of Structural Units in PDB entry:
4D83


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D83 entry

There are 3 chains in PDB entry 4D83 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2ASN 374
B
 SER -2ASN 374
C
 SER -2ASN 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 4D83. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-2 2Right-handed 310
Helix 2
2
A
53 57Right-handed 310
Helix 3
3
A
123 127Right-handed 310
Helix 4
4
A
135 144Right-handed alpha
Helix 5
5
A
205 211Right-handed 310
Helix 6
6
A
227 241Right-handed alpha
Helix 7
7
A
265 269Right-handed 310
Helix 8
8
A
290 294Right-handed alpha
Helix 9
9
A
323 328Right-handed alpha
Helix 10
10
A
336 338Right-handed 310
Helix 11
11
A
367 372Right-handed 310
Helix 12
12
B
-2 2Right-handed 310
Helix 13
13
B
53 57Right-handed 310
Helix 14
14
B
123 127Right-handed 310
Helix 15
15
B
135 144Right-handed alpha
Helix 16
16
B
169 171Right-handed 310
Helix 17
17
B
205 211Right-handed 310
Helix 18
18
B
227 242Right-handed alpha
Helix 19
19
B
247 252Right-handed alpha
Helix 20
20
B
265 269Right-handed 310
Helix 21
21
B
290 294Right-handed alpha
Helix 22
22
B
323 328Right-handed alpha
Helix 23
23
B
367 372Right-handed 310
Helix 24
24
C
-2 3Right-handed 310
Helix 25
25
C
53 57Right-handed 310
Helix 26
26
C
123 127Right-handed 310
Helix 27
27
C
135 144Right-handed alpha
Helix 28
28
C
169 171Right-handed 310
Helix 29
29
C
207 211Right-handed 310
Helix 30
30
C
227 242Right-handed alpha
Helix 31
31
C
247 252Right-handed alpha
Helix 32
32
C
265 269Right-handed 310
Helix 33
33
C
290 294Right-handed alpha
Helix 34
34
C
323 328Right-handed alpha
Helix 35
35
C
336 338Right-handed 310
Helix 36
36
C
367 372Right-handed alpha
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There are 15 sheets in PDB entry 4D83. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 70first strand
Strand 2
A
75 86anti-parallel
Strand 3
A
14 20anti-parallel
Strand 4
A
6 8anti-parallel
Strand 5
A
159 165anti-parallel
Strand 6
A
150 154anti-parallel
Strand 7
A
330 335anti-parallel
Strand 8
A
340 346anti-parallel
Strand 9
A
173 181anti-parallel
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There are 13 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 70first strand
Strand 2
A
75 86anti-parallel
Strand 3
A
94 106anti-parallel
Strand 4
A
38 41parallel
Strand 5
A
117 120anti-parallel
Strand 6
A
25 32parallel
Strand 7
A
14 20anti-parallel
Strand 8
A
6 8anti-parallel
Strand 9
A
159 165anti-parallel
Strand 10
A
150 154anti-parallel
Strand 11
A
330 335anti-parallel
Strand 12
A
340 346anti-parallel
Strand 13
A
173 181anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 190first strand
Strand 2
A
214 216anti-parallel
Strand 3
A
320 322parallel
Strand 4
A
223 226anti-parallel
Strand 5
A
313 316parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 201first strand
Strand 2
A
192 197anti-parallel
Strand 3
A
272 277anti-parallel
Strand 4
A
283 289anti-parallel
Strand 5
A
358 364anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 260first strand
Strand 2
A
306 311anti-parallel
Strand 3
A
295 297anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 70first strand
Strand 2
B
75 86anti-parallel
Strand 3
B
14 20anti-parallel
Strand 4
B
6 8anti-parallel
Strand 5
B
159 165anti-parallel
Strand 6
B
150 154anti-parallel
Strand 7
B
330 335anti-parallel
Strand 8
B
340 346anti-parallel
Strand 9
B
173 181anti-parallel
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There are 13 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 70first strand
Strand 2
B
75 86anti-parallel
Strand 3
B
94 106anti-parallel
Strand 4
B
38 41parallel
Strand 5
B
117 120anti-parallel
Strand 6
B
25 32parallel
Strand 7
B
14 20anti-parallel
Strand 8
B
6 8anti-parallel
Strand 9
B
159 165anti-parallel
Strand 10
B
150 154anti-parallel
Strand 11
B
330 335anti-parallel
Strand 12
B
340 346anti-parallel
Strand 13
B
173 181anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 190first strand
Strand 2
B
214 216anti-parallel
Strand 3
B
320 322parallel
Strand 4
B
223 226anti-parallel
Strand 5
B
313 316parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 201first strand
Strand 2
B
192 197anti-parallel
Strand 3
B
272 277anti-parallel
Strand 4
B
283 289anti-parallel
Strand 5
B
358 364anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
257 260first strand
Strand 2
B
306 311anti-parallel
Strand 3
B
295 297anti-parallel
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There are 9 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 70first strand
Strand 2
C
75 86anti-parallel
Strand 3
C
15 20anti-parallel
Strand 4
C
6 8anti-parallel
Strand 5
C
159 165anti-parallel
Strand 6
C
150 154anti-parallel
Strand 7
C
330 335anti-parallel
Strand 8
C
340 346anti-parallel
Strand 9
C
173 181anti-parallel
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There are 13 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 70first strand
Strand 2
C
75 86anti-parallel
Strand 3
C
95 106anti-parallel
Strand 4
C
38 41parallel
Strand 5
C
117 120anti-parallel
Strand 6
C
25 32parallel
Strand 7
C
15 20anti-parallel
Strand 8
C
6 8anti-parallel
Strand 9
C
159 165anti-parallel
Strand 10
C
150 154anti-parallel
Strand 11
C
330 335anti-parallel
Strand 12
C
340 346anti-parallel
Strand 13
C
173 181anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
189 190first strand
Strand 2
C
214 216anti-parallel
Strand 3
C
320 322parallel
Strand 4
C
223 226anti-parallel
Strand 5
C
313 316parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
200 201first strand
Strand 2
C
192 197anti-parallel
Strand 3
C
272 276anti-parallel
Strand 4
C
284 289anti-parallel
Strand 5
C
358 363anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
257 259first strand
Strand 2
C
307 311anti-parallel
Strand 3
C
295 297anti-parallel
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