Analysis of interatomic Contacts of Structural Units in PDB entry:
4D9E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D9E entry

There are 4 chains in PDB entry 4D9E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 328
B
 HIS 4VAL 328
C
 LEU 6VAL 328
D
 MET 1VAL 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 63 helices in PDB entry 4D9E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 7Right-handed 310
Helix 2
2
A
24 32Right-handed alpha
Helix 3
3
A
41 43Right-handed 310
Helix 4
4
A
50 65Right-handed alpha
Helix 5
5
A
78 92Right-handed alpha
Helix 6
6
A
107 113Right-handed alpha
Helix 7
7
A
114 122Right-handed alpha
Helix 8
8
A
134 149Right-handed alpha
Helix 9
9
A
157 161Right-handed 310
Helix 10
10
A
162 181Right-handed alpha
Helix 11
11
A
196 210Right-handed alpha
Helix 12
12
A
223 242Right-handed alpha
Helix 13
13
A
265 280Right-handed alpha
Helix 14
14
A
287 301Right-handed alpha
Helix 15
15
A
317 319Right-handed 310
Helix 16
16
A
320 325Right-handed alpha
Helix 17
17
B
4 9Right-handed 310
Helix 18
18
B
24 32Right-handed alpha
Helix 19
19
B
41 43Right-handed 310
Helix 20
20
B
50 65Right-handed alpha
Helix 21
21
B
78 92Right-handed alpha
Helix 22
22
B
107 113Right-handed alpha
Helix 23
23
B
114 122Right-handed alpha
Helix 24
24
B
134 149Right-handed alpha
Helix 25
25
B
157 161Right-handed 310
Helix 26
26
B
166 180Right-handed alpha
Helix 27
27
B
196 210Right-handed alpha
Helix 28
28
B
223 242Right-handed alpha
Helix 29
29
B
265 280Right-handed alpha
Helix 30
30
B
287 301Right-handed alpha
Helix 31
31
B
317 319Right-handed 310
Helix 32
32
B
320 325Right-handed alpha
Helix 33
33
C
24 32Right-handed alpha
Helix 34
34
C
41 43Right-handed 310
Helix 35
35
C
50 65Right-handed alpha
Helix 36
36
C
78 92Right-handed alpha
Helix 37
37
C
107 113Right-handed alpha
Helix 38
38
C
114 122Right-handed alpha
Helix 39
39
C
134 149Right-handed alpha
Helix 40
40
C
157 161Right-handed 310
Helix 41
41
C
166 181Right-handed alpha
Helix 42
42
C
196 210Right-handed alpha
Helix 43
43
C
223 242Right-handed alpha
Helix 44
44
C
265 280Right-handed alpha
Helix 45
45
C
287 301Right-handed alpha
Helix 46
46
C
317 319Right-handed 310
Helix 47
47
C
320 325Right-handed alpha
Helix 48
48
D
5 9Right-handed 310
Helix 49
49
D
24 32Right-handed alpha
Helix 50
50
D
41 43Right-handed 310
Helix 51
51
D
50 65Right-handed alpha
Helix 52
52
D
78 92Right-handed alpha
Helix 53
53
D
107 113Right-handed alpha
Helix 54
54
D
114 122Right-handed alpha
Helix 55
55
D
134 149Right-handed alpha
Helix 56
56
D
157 161Right-handed 310
Helix 57
57
D
162 181Right-handed alpha
Helix 58
58
D
196 210Right-handed alpha
Helix 59
59
D
223 242Right-handed alpha
Helix 60
60
D
265 280Right-handed alpha
Helix 61
61
D
287 301Right-handed alpha
Helix 62
62
D
317 319Right-handed 310
Helix 63
63
D
320 325Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 4D9E. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
35 39anti-parallel
Strand 3
A
310 314parallel
Strand 4
A
188 193parallel
Strand 5
A
214 219parallel
Strand 6
A
251 253parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 128first strand
Strand 2
A
94 100parallel
Strand 3
A
69 75parallel
Strand 4
A
153 155parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 23first strand
Strand 2
B
35 39anti-parallel
Strand 3
B
310 314parallel
Strand 4
B
188 193parallel
Strand 5
B
214 219parallel
Strand 6
B
251 253parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 128first strand
Strand 2
B
94 100parallel
Strand 3
B
69 75parallel
Strand 4
B
153 155parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
21 23first strand
Strand 2
C
35 39anti-parallel
Strand 3
C
310 314parallel
Strand 4
C
188 193parallel
Strand 5
C
214 219parallel
Strand 6
C
251 253parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 128first strand
Strand 2
C
94 100parallel
Strand 3
C
69 75parallel
Strand 4
C
153 155parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
21 23first strand
Strand 2
D
35 39anti-parallel
Strand 3
D
310 314parallel
Strand 4
D
188 193parallel
Strand 5
D
214 219parallel
Strand 6
D
251 253parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
125 128first strand
Strand 2
D
94 100parallel
Strand 3
D
69 75parallel
Strand 4
D
153 155parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il